mm9_v1_chr4_-_117169519_117169656	1.75891	NANOG{mouse}.p2	BC056359|Rnf220|66743|ring finger protein 220	BC058415|Rnf220|66743|ring finger protein 220	NM_025739|Rnf220|66743|ring finger protein 220	AK028975|Rnf220|66743|ring finger protein 220	AK041785|Rnf220|66743|ring finger protein 220
mm9_v1_chr16_-_17125198_17125232	1.46882	NANOG{mouse}.p2	BC039993|2610318N02Rik|70458|RIKEN cDNA 2610318N02 gene	NM_183287|2610318N02Rik|70458|RIKEN cDNA 2610318N02 gene	AK012048|2610318N02Rik|70458|RIKEN cDNA 2610318N02 gene	AK146836|2610318N02Rik|70458|RIKEN cDNA 2610318N02 gene
mm9_v1_chr8_-_67212325_67212399	1.3373	NANOG{mouse}.p2	AK146684|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK169017|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK045059|Sc4mol|66234|sterol-C4-methyl oxidase-like	BC006802|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK005441|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK005090|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK151135|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK154682|Sc4mol|66234|sterol-C4-methyl oxidase-like	NM_025436|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK010570|Sc4mol|66234|sterol-C4-methyl oxidase-like
mm9_v1_chr18_+_35278553_35278581	1.26884	NANOG{mouse}.p2	NM_009818|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	X59990|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK148496|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC060174|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC068316|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	D90362|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC048163|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr13_-_97440734_97440890	1.17674	NANOG{mouse}.p2	AK159899|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	BC085083|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	AK048784|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	NM_008255|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chrX_-_106029678_106029693	0.989459	NANOG{mouse}.p2	AK050539|Brwd3|382236|bromodomain and WD repeat domain containing 3	AK163354|Brwd3|382236|bromodomain and WD repeat domain containing 3	NM_001081477|Brwd3|382236|bromodomain and WD repeat domain containing 3
mm9_v1_chr18_+_35278538_35278551	0.94777	NANOG{mouse}.p2	AK168635|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK036752|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK149721|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK149738|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK159339|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr14_-_19164241_19164397	0.946235	NANOG{mouse}.p2	BC003781|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK148266|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	X92665|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK090177|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	NM_009455|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)
mm9_v1_chr6_+_5340417_5340708	0.912579	NANOG{mouse}.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr4_+_154335029_154335081	0.871394	NANOG{mouse}.p2	AK139390|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	AK078170|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	AK087508|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	AK156545|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	NM_010419|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	BC099863|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	BC099864|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	BC099865|Hes5|15208|hairy and enhancer of split 5 (Drosophila)	BC103539|Hes5|15208|hairy and enhancer of split 5 (Drosophila)
mm9_v1_chr10_+_43621580_43621645	0.83862	NANOG{mouse}.p2	AK088029|Rtn4ip1|170728|reticulon 4 interacting protein 1	NM_130892|Rtn4ip1|170728|reticulon 4 interacting protein 1	AK050324|Rtn4ip1|170728|reticulon 4 interacting protein 1	AK085858|Rtn4ip1|170728|reticulon 4 interacting protein 1	BC024116|Rtn4ip1|170728|reticulon 4 interacting protein 1
mm9_v1_chr7_-_150646883_150646954	0.825859	NANOG{mouse}.p2	U22399|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	BC005412|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK077844|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK132278|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_001161624|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_009876|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr5_+_120881778_120882006	0.763727	NANOG{mouse}.p2	U61155|Lhx5|16873|LIM homeobox protein 5	AK140208|Lhx5|16873|LIM homeobox protein 5	NM_008499|Lhx5|16873|LIM homeobox protein 5	AK048778|Lhx5|16873|LIM homeobox protein 5	AK033927|Lhx5|16873|LIM homeobox protein 5	BC057585|Lhx5|16873|LIM homeobox protein 5
mm9_v1_chr2_+_131059782_131059822	0.762821	NANOG{mouse}.p2	AK161823|Mavs|228607|mitochondrial antiviral signaling protein	AK153748|Mavs|228607|mitochondrial antiviral signaling protein	AK028421|Mavs|228607|mitochondrial antiviral signaling protein	AK028708|Mavs|228607|mitochondrial antiviral signaling protein	AX775773|Mavs|228607|mitochondrial antiviral signaling protein
mm9_v1_chr4_+_114761644_114761734	0.762456	NANOG{mouse}.p2	BC013542|Pdzk1ip1|67182|PDZK1 interacting protein 1	AB009296|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr4_-_6917964_6917984	0.758545	NANOG{mouse}.p2	AK169546|Tox|252838|thymocyte selection-associated high mobility group box
mm9_v1_chr8_-_8661238_8661245	0.757082	NANOG{mouse}.p2	AK132512|Efnb2|13642|ephrin B2	AK134108|Efnb2|13642|ephrin B2	AK143059|Efnb2|13642|ephrin B2	AK142203|Efnb2|13642|ephrin B2	AK142283|Efnb2|13642|ephrin B2
mm9_v1_chr5_+_93522440_93522507	0.73271	NANOG{mouse}.p2	AK166517|Sept11|52398|septin 11	AK171368|Sept11|52398|septin 11	BC064466|Sept11|52398|septin 11	NM_001009818|Sept11|52398|septin 11
mm9_v1_chrX_-_34529439_34529513	0.732518	NANOG{mouse}.p2	AB023622|Sept6|56526|septin 6	AK088614|Sept6|56526|septin 6	AK088406|Sept6|56526|septin 6	AK172894|Sept6|56526|septin 6	BC010489|Sept6|56526|septin 6	AK012858|Sept6|56526|septin 6	AK160884|Sept6|56526|septin 6	AK083302|Sept6|56526|septin 6	AK162755|Sept6|56526|septin 6	AK048455|Sept6|56526|septin 6	NM_001177323|Sept6|56526|septin 6
mm9_v1_chr16_-_16560240_16560303	0.722938	NANOG{mouse}.p2	BC145523|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402611|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139232|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402613|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139234|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK034504|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK134961|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr18_+_35278585_35278617	0.716823	NANOG{mouse}.p2	BC105576|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK004623|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr15_-_98783909_98783984	0.715146	NANOG{mouse}.p2	M13445|Tuba1a|22142|tubulin, alpha 1A	NM_011653|Tuba1a|22142|tubulin, alpha 1A	AK077529|Tuba1a|22142|tubulin, alpha 1A	BC056169|Tuba1a|22142|tubulin, alpha 1A	BC083344|Tuba1a|22142|tubulin, alpha 1A	BC083343|Tuba1a|22142|tubulin, alpha 1A	BC085256|Tuba1a|22142|tubulin, alpha 1A	BC083345|Tuba1a|22142|tubulin, alpha 1A	AK145404|Tuba1a|22142|tubulin, alpha 1A	AK146983|Tuba1a|22142|tubulin, alpha 1A	AK167687|Tuba1a|22142|tubulin, alpha 1A	AK168762|Tuba1a|22142|tubulin, alpha 1A	AK169610|Tuba1a|22142|tubulin, alpha 1A	AK164335|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr4_+_118781405_118781458	0.701195	NANOG{mouse}.p2	AK155252|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK170425|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK089353|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK170873|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M22998|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chrX_-_34529689_34529693	0.696397	NANOG{mouse}.p2	NM_001177324|Sept6|56526|septin 6	NM_019942|Sept6|56526|septin 6
mm9_v1_chr15_-_83555335_83555492	0.672571	NANOG{mouse}.p2	AF276425|Scube1|64706|signal peptide, CUB domain, EGF-like 1	BC066066|Scube1|64706|signal peptide, CUB domain, EGF-like 1	BC080278|Scube1|64706|signal peptide, CUB domain, EGF-like 1	AK041590|Scube1|64706|signal peptide, CUB domain, EGF-like 1	NM_022723|Scube1|64706|signal peptide, CUB domain, EGF-like 1
mm9_v1_chr5_-_45190857_45190945	0.661868	NANOG{mouse}.p2	U89487|Ldb2|16826|LIM domain binding 2	U89489|Ldb2|16826|LIM domain binding 2	BC079611|Ldb2|16826|LIM domain binding 2	AK147160|Ldb2|16826|LIM domain binding 2	AK146860|Ldb2|16826|LIM domain binding 2	NM_001077398|Ldb2|16826|LIM domain binding 2	NM_010698|Ldb2|16826|LIM domain binding 2
mm9_v1_chr10_-_60610238_60610394	0.631681	NANOG{mouse}.p2	AK036747|Sgpl1|20397|sphingosine phosphate lyase 1	AK150053|Sgpl1|20397|sphingosine phosphate lyase 1	AK173137|Sgpl1|20397|sphingosine phosphate lyase 1	AF036894|Sgpl1|20397|sphingosine phosphate lyase 1	BC026135|Sgpl1|20397|sphingosine phosphate lyase 1	AK037789|Sgpl1|20397|sphingosine phosphate lyase 1	AK043024|Sgpl1|20397|sphingosine phosphate lyase 1	AK049342|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr4_-_6917628_6917956	0.613608	NANOG{mouse}.p2	AK161718|Tox|252838|thymocyte selection-associated high mobility group box	AK161578|Tox|252838|thymocyte selection-associated high mobility group box	AF472514|Tox|252838|thymocyte selection-associated high mobility group box	AK029694|Tox|252838|thymocyte selection-associated high mobility group box	AK133397|Tox|252838|thymocyte selection-associated high mobility group box	BC080732|Tox|252838|thymocyte selection-associated high mobility group box	AK038671|Tox|252838|thymocyte selection-associated high mobility group box	NM_145711|Tox|252838|thymocyte selection-associated high mobility group box
mm9_v1_chr5_+_28492235_28492251	0.568349	NANOG{mouse}.p2	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr6_-_82724366_82724447	0.520418	NANOG{mouse}.p2	BC054472|Hk2|15277|hexokinase 2	AJ238540|Hk2|15277|hexokinase 2	AK019092|Hk2|15277|hexokinase 2	AK145936|Hk2|15277|hexokinase 2	AK009328|Hk2|15277|hexokinase 2	NM_013820|Hk2|15277|hexokinase 2
mm9_v1_chr6_-_51419726_51419880	0.516875	NANOG{mouse}.p2	BC141253|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	BC145588|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AF073993|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AK089012|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr15_-_102355046_102355051	0.515843	NANOG{mouse}.p2	BC107294|Npff|54615|neuropeptide FF-amide peptide precursor	AF148701|Npff|54615|neuropeptide FF-amide peptide precursor	BC107295|Npff|54615|neuropeptide FF-amide peptide precursor	NM_018787|Npff|54615|neuropeptide FF-amide peptide precursor
mm9_v1_chr8_-_27229485_27229708	0.508468	NANOG{mouse}.p2	AY223806|Hook3|320191|hook homolog 3 (Drosophila)	BC090960|Hook3|320191|hook homolog 3 (Drosophila)	AK054263|Hook3|320191|hook homolog 3 (Drosophila)	AK170858|Hook3|320191|hook homolog 3 (Drosophila)	AK080377|Hook3|320191|hook homolog 3 (Drosophila)	AK145149|Hook3|320191|hook homolog 3 (Drosophila)	NM_207659|Hook3|320191|hook homolog 3 (Drosophila)
mm9_v1_chr4_+_118781336_118781380	0.486841	NANOG{mouse}.p2	NM_011400|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M23384|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	BC055340|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr6_-_29559792_29559839	0.486031	NANOG{mouse}.p2	AK049446|Tnpo3|320938|transportin 3	BC075678|Tnpo3|320938|transportin 3
mm9_v1_chr2_+_181498036_181498036	0.468309	NANOG{mouse}.p2	BC063252|Myt1|17932|myelin transcription factor 1	NM_001171615|Myt1|17932|myelin transcription factor 1
mm9_v1_chr9_-_56008595_56008764	0.450594	NANOG{mouse}.p2	AK089494|Tspan3|56434|tetraspanin 3	AK154919|Tspan3|56434|tetraspanin 3	AB009021|Tspan3|56434|tetraspanin 3	AF133427|Tspan3|56434|tetraspanin 3	AB072450|Tspan3|56434|tetraspanin 3	AK053325|Tspan3|56434|tetraspanin 3	AK141951|Tspan3|56434|tetraspanin 3	AK006798|Tspan3|56434|tetraspanin 3	AK152175|Tspan3|56434|tetraspanin 3
mm9_v1_chr10_-_62801726_62801784	0.450134	NANOG{mouse}.p2	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr16_+_35770488_35770517	0.442072	NANOG{mouse}.p2	AK028824|Hspbap1|66667|Hspb associated protein 1	AK138906|Hspbap1|66667|Hspb associated protein 1	AK049404|Hspbap1|66667|Hspb associated protein 1	AK076189|Hspbap1|66667|Hspb associated protein 1	AK017731|Hspbap1|66667|Hspb associated protein 1
mm9_v1_chr2_-_180773777_180773949	0.432849	NANOG{mouse}.p2	AY574263|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AF225912|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK083157|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK136886|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	BC053013|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	NM_015730|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK143938|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK034228|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4
mm9_v1_chr12_+_80130149_80130201	0.425068	NANOG{mouse}.p2	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chrX_-_147248815_147248863	0.419433	NANOG{mouse}.p2	AJ277114|Maged2|80884|melanoma antigen, family D, 2	NM_030700|Maged2|80884|melanoma antigen, family D, 2	AK169006|Maged2|80884|melanoma antigen, family D, 2
mm9_v1_chr10_-_43621485_43621487	0.41008	NANOG{mouse}.p2	AK170225|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
mm9_v1_chr11_+_94189303_94189504	0.406344	NANOG{mouse}.p2	NM_027799|Ankrd40|71452|ankyrin repeat domain 40	NM_146024|Ankrd40|71452|ankyrin repeat domain 40	BC023133|Ankrd40|71452|ankyrin repeat domain 40
mm9_v1_chr10_+_20032269_20032343	0.404255	NANOG{mouse}.p2	NM_001025392|Bclaf1|72567|BCL2-associated transcription factor 1	NM_001025393|Bclaf1|72567|BCL2-associated transcription factor 1	NM_153787|Bclaf1|72567|BCL2-associated transcription factor 1	AK161692|Bclaf1|72567|BCL2-associated transcription factor 1	BC086624|Bclaf1|72567|BCL2-associated transcription factor 1	AK162896|Bclaf1|72567|BCL2-associated transcription factor 1	AK141834|Bclaf1|72567|BCL2-associated transcription factor 1	AK149724|Bclaf1|72567|BCL2-associated transcription factor 1	AK150017|Bclaf1|72567|BCL2-associated transcription factor 1	AK088741|Bclaf1|72567|BCL2-associated transcription factor 1	AK011802|Bclaf1|72567|BCL2-associated transcription factor 1	BC028963|Bclaf1|72567|BCL2-associated transcription factor 1	BC034300|Bclaf1|72567|BCL2-associated transcription factor 1	BC029682|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr7_-_26082941_26082973	0.3872	NANOG{mouse}.p2	AK167496|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	BC067015|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	AK039375|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	AK154547|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	NM_008776|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	U57746|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm9_v1_chr4_+_6292817_6292904	0.370629	NANOG{mouse}.p2	AK169415|Sdcbp|53378|syndecan binding protein	NM_001098227|Sdcbp|53378|syndecan binding protein	NM_016807|Sdcbp|53378|syndecan binding protein	AK033412|Sdcbp|53378|syndecan binding protein	AF003693|Sdcbp|53378|syndecan binding protein	AK150721|Sdcbp|53378|syndecan binding protein	AK152080|Sdcbp|53378|syndecan binding protein	AK159677|Sdcbp|53378|syndecan binding protein	AK150623|Sdcbp|53378|syndecan binding protein	AK152552|Sdcbp|53378|syndecan binding protein	AK153112|Sdcbp|53378|syndecan binding protein	AK169219|Sdcbp|53378|syndecan binding protein	AK045668|Sdcbp|53378|syndecan binding protein	AK168004|Sdcbp|53378|syndecan binding protein	AK028429|Sdcbp|53378|syndecan binding protein	AK146085|Sdcbp|53378|syndecan binding protein	AK150544|Sdcbp|53378|syndecan binding protein	AK150996|Sdcbp|53378|syndecan binding protein	AK151050|Sdcbp|53378|syndecan binding protein	AK152017|Sdcbp|53378|syndecan binding protein	AK152434|Sdcbp|53378|syndecan binding protein	AK153042|Sdcbp|53378|syndecan binding protein	AK159538|Sdcbp|53378|syndecan binding protein	AK169687|Sdcbp|53378|syndecan binding protein	AK171162|Sdcbp|53378|syndecan binding protein	AK150707|Sdcbp|53378|syndecan binding protein	AK152001|Sdcbp|53378|syndecan binding protein	AK152577|Sdcbp|53378|syndecan binding protein	AK152855|Sdcbp|53378|syndecan binding protein	AK152109|Sdcbp|53378|syndecan binding protein	AK150801|Sdcbp|53378|syndecan binding protein	AK014678|Sdcbp|53378|syndecan binding protein	AK150321|Sdcbp|53378|syndecan binding protein	AK150661|Sdcbp|53378|syndecan binding protein	AK150736|Sdcbp|53378|syndecan binding protein	AK159124|Sdcbp|53378|syndecan binding protein	AK165657|Sdcbp|53378|syndecan binding protein	AK167513|Sdcbp|53378|syndecan binding protein	AK168777|Sdcbp|53378|syndecan binding protein	BC019400|Sdcbp|53378|syndecan binding protein	AK150278|Sdcbp|53378|syndecan binding protein	AF077527|Sdcbp|53378|syndecan binding protein	AK159323|Sdcbp|53378|syndecan binding protein
mm9_v1_chr19_+_40969176_40969231	0.366151	NANOG{mouse}.p2	AK087532|E130314M14Rik|449522|RIKEN cDNA E130314M14 gene	AK041506|Zfp518a|72672|zinc finger protein 518A	NM_028319|Zfp518a|72672|zinc finger protein 518A
mm9_v1_chr11_-_116704762_116704824	0.362683	NANOG{mouse}.p2	BC056629|Jmjd6|107817|jumonji domain containing 6	EF527404|Jmjd6|107817|jumonji domain containing 6	NM_033398|Jmjd6|107817|jumonji domain containing 6
mm9_v1_chr12_-_28027272_28027439	0.354307	NANOG{mouse}.p2	AB108675|Sox11|20666|SRY-box containing gene 11	BC062095|Sox11|20666|SRY-box containing gene 11	BC053503|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr19_+_45225176_45225204	0.353748	NANOG{mouse}.p2	BC018246|Tlx1|21908|T-cell leukemia, homeobox 1	NM_021901|Tlx1|21908|T-cell leukemia, homeobox 1
mm9_v1_chr10_-_62486581_62486641	0.352924	NANOG{mouse}.p2	AK158707|D10Bwg1070e|52902|DNA segment, Chr 10, Brigham & Women's Genetics 1070 expressed	BC049652|Hnrnph3|432467|heterogeneous nuclear ribonucleoprotein H3	NM_001079824|Hnrnph3|432467|heterogeneous nuclear ribonucleoprotein H3	AK156477|D10Bwg1070e|52902|DNA segment, Chr 10, Brigham & Women's Genetics 1070 expressed
mm9_v1_chr1_-_137210293_137210334	0.351129	NANOG{mouse}.p2	AF106620|Timm17a|21854|translocase of inner mitochondrial membrane 17a	BC010830|Timm17a|21854|translocase of inner mitochondrial membrane 17a	BC098216|Timm17a|21854|translocase of inner mitochondrial membrane 17a	AK003114|Timm17a|21854|translocase of inner mitochondrial membrane 17a	AK003129|Timm17a|21854|translocase of inner mitochondrial membrane 17a	NM_011590|Timm17a|21854|translocase of inner mitochondrial membrane 17a
mm9_v1_chr11_+_116704828_116704913	0.346543	NANOG{mouse}.p2	NM_028865|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene	AK135294|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene	AK168267|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene	BC026936|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene
mm9_v1_chr5_+_21151760_21151873	0.335339	NANOG{mouse}.p2	BC058573|Armc10|67211|armadillo repeat containing 10	AK011303|Armc10|67211|armadillo repeat containing 10	NM_026034|Armc10|67211|armadillo repeat containing 10	AK009821|Armc10|67211|armadillo repeat containing 10	AK012872|Armc10|67211|armadillo repeat containing 10	BC046281|Armc10|67211|armadillo repeat containing 10	BC038487|Armc10|67211|armadillo repeat containing 10	BC027343|Armc10|67211|armadillo repeat containing 10
mm9_v1_chr16_+_62854129_62854197	0.332912	NANOG{mouse}.p2	AK163032|Pros1|19128|protein S (alpha)	AK145501|Pros1|19128|protein S (alpha)	NM_011173|Pros1|19128|protein S (alpha)	Z25469|Pros1|19128|protein S (alpha)	BC128316|Pros1|19128|protein S (alpha)
mm9_v1_chr14_+_76904316_76904371	0.329473	NANOG{mouse}.p2	AK147039|Tsc22d1|21807|TSC22 domain family, member 1	NM_009366|Tsc22d1|21807|TSC22 domain family, member 1	AK145204|Tsc22d1|21807|TSC22 domain family, member 1	AK135277|Tsc22d1|21807|TSC22 domain family, member 1	AK135282|Tsc22d1|21807|TSC22 domain family, member 1	AK135514|Tsc22d1|21807|TSC22 domain family, member 1	AK148732|Tsc22d1|21807|TSC22 domain family, member 1	X62940|Tsc22d1|21807|TSC22 domain family, member 1	AK179000|Tsc22d1|21807|TSC22 domain family, member 1	BC026703|Tsc22d1|21807|TSC22 domain family, member 1
mm9_v1_chr1_+_157005804_157006022	0.326011	NANOG{mouse}.p2	NM_021433|Stx6|58244|syntaxin 6	AK018167|Stx6|58244|syntaxin 6	AK031673|Stx6|58244|syntaxin 6	AK159392|Stx6|58244|syntaxin 6	AK019106|Stx6|58244|syntaxin 6	AK044905|Stx6|58244|syntaxin 6	AK049124|Stx6|58244|syntaxin 6	AK009690|Stx6|58244|syntaxin 6	AK151549|Stx6|58244|syntaxin 6	BC029205|Stx6|58244|syntaxin 6	AF237814|Stx6|58244|syntaxin 6
mm9_v1_chr1_+_45852310_45852408	0.324352	NANOG{mouse}.p2	BC085177|Wdr75|73674|WD repeat domain 75	BC117880|Wdr75|73674|WD repeat domain 75	BC117881|Wdr75|73674|WD repeat domain 75	AK010772|Wdr75|73674|WD repeat domain 75	AK152412|Wdr75|73674|WD repeat domain 75	AK168163|Wdr75|73674|WD repeat domain 75	NM_028599|Wdr75|73674|WD repeat domain 75	AK169932|Wdr75|73674|WD repeat domain 75	AK168032|Wdr75|73674|WD repeat domain 75	AK163221|Wdr75|73674|WD repeat domain 75	AK199189|Wdr75|73674|WD repeat domain 75	AK207424|Wdr75|73674|WD repeat domain 75
mm9_v1_chr13_-_117099629_117099895	0.323029	NANOG{mouse}.p2	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr10_-_43621518_43621567	0.320081	NANOG{mouse}.p2	BC070459|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	AK012351|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	NM_001081054|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	AK041347|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	AK038801|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
mm9_v1_chr2_-_37558818_37558881	0.318966	NANOG{mouse}.p2	AK043648|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr5_-_34278958_34278970	0.307725	NANOG{mouse}.p2	AK146185|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK019191|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)
mm9_v1_chr4_-_134828699_134828733	0.306028	NANOG{mouse}.p2	AK170942|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr15_-_81877947_81878027	0.29857	NANOG{mouse}.p2	BC083315|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK134943|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	BC026755|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	BC054450|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK004489|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK168930|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	U95114|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK168808|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK145608|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK169103|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK145391|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	NM_011482|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
mm9_v1_chr8_+_28134259_28134401	0.291626	NANOG{mouse}.p2	BC036333|Erlin2|244373|ER lipid raft associated 2	AK030557|Erlin2|244373|ER lipid raft associated 2	BC038374|Erlin2|244373|ER lipid raft associated 2	NM_153592|Erlin2|244373|ER lipid raft associated 2
mm9_v1_chr2_-_84510822_84510901	0.290812	NANOG{mouse}.p2	AK167638|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK012609|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK142622|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK171972|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	BC056177|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	NM_001033166|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	NM_001037279|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene
mm9_v1_chr2_+_84976516_84976632	0.289924	NANOG{mouse}.p2	AK133580|Aplnr|23796|apelin receptor	NM_011784|Aplnr|23796|apelin receptor	BC039224|Aplnr|23796|apelin receptor	AK157582|Aplnr|23796|apelin receptor	AK087138|Aplnr|23796|apelin receptor	AK075706|Aplnr|23796|apelin receptor	AK052383|Aplnr|23796|apelin receptor	AK078374|Aplnr|23796|apelin receptor
mm9_v1_chr7_+_86956134_86956146	0.277881	NANOG{mouse}.p2	AK146740|Mesp2|17293|mesoderm posterior 2
mm9_v1_chr5_+_93522512_93522577	0.277232	NANOG{mouse}.p2	AK028475|Sept11|52398|septin 11	BC031456|Sept11|52398|septin 11
mm9_v1_chr2_-_118375365_118375421	0.269345	NANOG{mouse}.p2	AK040622|Bmf|171543|BCL2 modifying factor	AK169903|Bmf|171543|BCL2 modifying factor	NM_138313|Bmf|171543|BCL2 modifying factor	AK084658|Bmf|171543|BCL2 modifying factor
mm9_v1_chr10_+_77441365_77441428	0.268156	NANOG{mouse}.p2	AK003097|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK004032|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	NM_026431|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC016605|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK075794|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC029982|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK165293|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK153233|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC010330|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK147511|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene
mm9_v1_chr16_-_24090166_24090201	0.262731	NANOG{mouse}.p2	
mm9_v1_chr16_+_35770431_35770480	0.26224	NANOG{mouse}.p2	AK089941|Hspbap1|66667|Hspb associated protein 1	NM_175111|Hspbap1|66667|Hspb associated protein 1
mm9_v1_chr3_+_67178037_67178091	0.260334	NANOG{mouse}.p2	BC027526|Mlf1|17349|myeloid leukemia factor 1	AF100171|Mlf1|17349|myeloid leukemia factor 1
mm9_v1_chr11_+_121282686_121282751	0.258886	NANOG{mouse}.p2	NM_181420|Fn3krp|238024|fructosamine 3 kinase related protein	AY360466|Fn3krp|238024|fructosamine 3 kinase related protein	AK034934|Fn3krp|238024|fructosamine 3 kinase related protein	BC032265|Fn3krp|238024|fructosamine 3 kinase related protein
mm9_v1_chr17_+_27693518_27693641	0.257921	NANOG{mouse}.p2	NM_001025427|Hmga1|15361|high mobility group AT-hook 1	NM_001039356|Hmga1|15361|high mobility group AT-hook 1	NM_001166535|Hmga1|15361|high mobility group AT-hook 1	NM_001166536|Hmga1|15361|high mobility group AT-hook 1	NM_001166539|Hmga1|15361|high mobility group AT-hook 1	NM_001166540|Hmga1|15361|high mobility group AT-hook 1	NM_001166541|Hmga1|15361|high mobility group AT-hook 1	NM_001166542|Hmga1|15361|high mobility group AT-hook 1	NM_001166543|Hmga1|15361|high mobility group AT-hook 1	NM_001166544|Hmga1|15361|high mobility group AT-hook 1	NM_001166545|Hmga1|15361|high mobility group AT-hook 1	NM_001166546|Hmga1|15361|high mobility group AT-hook 1	NM_001166537|Hmga1|15361|high mobility group AT-hook 1	NM_016660|Hmga1|15361|high mobility group AT-hook 1	AK171334|Hmga1|15361|high mobility group AT-hook 1	AK155661|Hmga1|15361|high mobility group AT-hook 1	BC013455|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK010617|Hmga1|15361|high mobility group AT-hook 1	AK169783|Hmga1|15361|high mobility group AT-hook 1	NM_001166476|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	NM_001166477|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK154957|Hmga1|15361|high mobility group AT-hook 1	AK160036|Hmga1|15361|high mobility group AT-hook 1	BC008125|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	BC093496|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1
mm9_v1_chr6_+_72548583_72548626	0.255898	NANOG{mouse}.p2	EF620363|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	EF620364|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	EF620365|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	AY704159|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	BC117751|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	NM_026159|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	BC117750|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)
mm9_v1_chr8_-_109580565_109580585	0.254099	NANOG{mouse}.p2	BC094654|Cog8|97484|component of oligomeric golgi complex 8	AK156186|Cog8|97484|component of oligomeric golgi complex 8	AK159569|Cog8|97484|component of oligomeric golgi complex 8	AK083734|Cog8|97484|component of oligomeric golgi complex 8	AK145727|Cog8|97484|component of oligomeric golgi complex 8	AK153617|Cog8|97484|component of oligomeric golgi complex 8	AK049957|Cog8|97484|component of oligomeric golgi complex 8
mm9_v1_chr7_+_134716896_134716950	0.25226	NANOG{mouse}.p2	AK089062|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	AK005277|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	BC138913|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	BC145734|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)
mm9_v1_chr8_+_36439713_36439732	0.251702	NANOG{mouse}.p2	BC060261|Ppp1r3b|244416|protein phosphatase 1, regulatory (inhibitor) subunit 3B
mm9_v1_chr18_-_24179208_24179311	0.245835	NANOG{mouse}.p2	AK146726|Zfp191|59057|zinc finger protein 191	BC054832|Zfp191|59057|zinc finger protein 191	NM_021559|Zfp191|59057|zinc finger protein 191	AY832930|Zfp191|59057|zinc finger protein 191
mm9_v1_chr11_-_102680467_102680523	0.24431	NANOG{mouse}.p2	BC050840|Gjc1|14615|gap junction protein, gamma 1	NM_001159382|Gjc1|14615|gap junction protein, gamma 1	BC023153|Gjc1|14615|gap junction protein, gamma 1	AY390397|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr2_-_154395469_154395650	0.242136	NANOG{mouse}.p2	AF483514|E2f1|13555|E2F transcription factor 1	AF483515|E2f1|13555|E2F transcription factor 1	BC052160|E2f1|13555|E2F transcription factor 1	L21973|E2f1|13555|E2F transcription factor 1	NM_007891|E2f1|13555|E2F transcription factor 1	AK153968|E2f1|13555|E2F transcription factor 1
mm9_v1_chr13_+_23830671_23830686	0.242103	NANOG{mouse}.p2	AK155502|Hist1h1c|50708|histone cluster 1, H1c	BC089604|Hist1h1c|50708|histone cluster 1, H1c	NM_015786|Hist1h1c|50708|histone cluster 1, H1c	AK002321|Hist1h1c|50708|histone cluster 1, H1c
mm9_v1_chr6_-_149050067_149050107	0.239389	NANOG{mouse}.p2	AK135015|Dennd5b|320560|DENN/MADD domain containing 5B	AK038858|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr6_-_41654290_41654346	0.239351	NANOG{mouse}.p2	AK028430|Kel|23925|Kell blood group	AF252870|Kel|23925|Kell blood group	NM_032540|Kel|23925|Kell blood group
mm9_v1_chr14_-_123382275_123382482	0.234315	NANOG{mouse}.p2	AK043293|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK049748|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK039093|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK044391|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK036741|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK045271|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK028333|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK033947|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	NM_028651|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4
mm9_v1_chr5_+_91201521_91201531	0.232256	NANOG{mouse}.p2	BC061111|Pf4|56744|platelet factor 4
mm9_v1_chr11_-_106021399_106021524	0.229365	NANOG{mouse}.p2	BC068130|Limd2|67803|LIM domain containing 2	AK049809|Limd2|67803|LIM domain containing 2	AK167349|Limd2|67803|LIM domain containing 2	AK169829|Limd2|67803|LIM domain containing 2	AK012581|Limd2|67803|LIM domain containing 2	AK032430|Limd2|67803|LIM domain containing 2	AK040486|Limd2|67803|LIM domain containing 2	NM_172397|Limd2|67803|LIM domain containing 2
mm9_v1_chr14_+_58691522_58691522	0.228744	NANOG{mouse}.p2	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr7_+_142843598_142843624	0.226085	NANOG{mouse}.p2	U36758|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK154910|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK160947|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr1_+_55145132_55145232	0.223931	NANOG{mouse}.p2	AK088121|Hspe1|15528|heat shock protein 1 (chaperonin 10)	U09659|Hspe1|15528|heat shock protein 1 (chaperonin 10)	BC099385|Hspe1|15528|heat shock protein 1 (chaperonin 10)	AK151935|Hspe1|15528|heat shock protein 1 (chaperonin 10)	AK133876|Hspe1|15528|heat shock protein 1 (chaperonin 10)	BC024385|Hspe1|15528|heat shock protein 1 (chaperonin 10)
mm9_v1_chr3_+_135101664_135101764	0.223551	NANOG{mouse}.p2	AK153111|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152231|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153410|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167801|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK151594|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK032885|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167077|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK090099|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC098220|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC024351|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK004001|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK049906|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	NM_025356|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167650|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159546|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152541|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159963|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC057941|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK088448|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr7_+_19679892_19679978	0.222713	NANOG{mouse}.p2	NM_011383|Six5|20475|sine oculis-related homeobox 5 homolog (Drosophila)
mm9_v1_chr7_-_146768633_146768702	0.221907	NANOG{mouse}.p2	L08074|Nkx6-2|14912|NK6 homeobox 2	AK008173|Nkx6-2|14912|NK6 homeobox 2	NM_183248|Nkx6-2|14912|NK6 homeobox 2
mm9_v1_chr2_+_32251776_32251794	0.221411	NANOG{mouse}.p2	BC004846|Ptges2|96979|prostaglandin E synthase 2	AK050616|Ptges2|96979|prostaglandin E synthase 2	AK002798|Ptges2|96979|prostaglandin E synthase 2
mm9_v1_chrX_-_91457986_91458033	0.220961	NANOG{mouse}.p2	AK128949|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AK171317|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	BC063755|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	BC139234|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	BC139235|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	NM_012010|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AK165866|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AK150095|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AK146900|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
mm9_v1_chrX_-_50622974_50623027	0.213038	NANOG{mouse}.p2	AK036417|Fam122b|78755|family with sequence similarity 122, member B	AK044896|Fam122b|78755|family with sequence similarity 122, member B	NM_001166365|Fam122b|78755|family with sequence similarity 122, member B	NM_001166583|Fam122b|78755|family with sequence similarity 122, member B	NM_030167|Fam122b|78755|family with sequence similarity 122, member B
mm9_v1_chrX_+_137909951_137910122	0.212994	NANOG{mouse}.p2	AK133179|Col4a5|12830|collagen, type IV, alpha 5	NM_001163155|Col4a5|12830|collagen, type IV, alpha 5	NM_007736|Col4a5|12830|collagen, type IV, alpha 5	AB041350|Col4a5|12830|collagen, type IV, alpha 5	BC082788|Col4a5|12830|collagen, type IV, alpha 5
mm9_v1_chr2_+_27532692_27532866	0.212843	NANOG{mouse}.p2	AK144675|Rxra|20181|retinoid X receptor alpha	NM_011305|Rxra|20181|retinoid X receptor alpha	M84817|Rxra|20181|retinoid X receptor alpha	BC138800|Rxra|20181|retinoid X receptor alpha	BC138802|Rxra|20181|retinoid X receptor alpha	X66223|Rxra|20181|retinoid X receptor alpha	AK031034|Rxra|20181|retinoid X receptor alpha
mm9_v1_chr6_-_72548335_72548408	0.212233	NANOG{mouse}.p2	AK049155|Elmod3|232089|ELMO/CED-12 domain containing 3	NM_144917|Elmod3|232089|ELMO/CED-12 domain containing 3	AK084010|Elmod3|232089|ELMO/CED-12 domain containing 3	AK164974|Elmod3|232089|ELMO/CED-12 domain containing 3
mm9_v1_chr9_+_64808638_64808765	0.211543	NANOG{mouse}.p2	NM_001077631|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK169772|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK035654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK041578|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK086850|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	BC024913|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK032095|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	NM_175153|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK050654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene
mm9_v1_chr14_-_70919701_70919955	0.21142	NANOG{mouse}.p2	AK004995|Bmp1|12153|bone morphogenetic protein 1	L24755|Bmp1|12153|bone morphogenetic protein 1	BC053923|Bmp1|12153|bone morphogenetic protein 1
mm9_v1_chr8_+_108939247_108939300	0.208856	NANOG{mouse}.p2	BC046230|Zfp90|22751|zinc finger protein 90	AK147423|Zfp90|22751|zinc finger protein 90	BC046298|Zfp90|22751|zinc finger protein 90	AK050519|Zfp90|22751|zinc finger protein 90	X79828|Zfp90|22751|zinc finger protein 90
mm9_v1_chr6_+_34304098_34304193	0.208598	NANOG{mouse}.p2	NM_008012|Akr1b8|14187|aldo-keto reductase family 1, member B8	U04204|Akr1b8|14187|aldo-keto reductase family 1, member B8	BC005789|Akr1b8|14187|aldo-keto reductase family 1, member B8
mm9_v1_chr17_+_34781733_34781827	0.206942	NANOG{mouse}.p2	AK146018|Fkbpl|56299|FK506 binding protein-like	BC046338|Fkbpl|56299|FK506 binding protein-like	NM_019873|Fkbpl|56299|FK506 binding protein-like
mm9_v1_chr9_-_60535699_60535786	0.204215	NANOG{mouse}.p2	BC016574|Lrrc49|102747|leucine rich repeat containing 49	AK041627|Lrrc49|102747|leucine rich repeat containing 49	AK049268|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr2_+_180921963_180922240	0.203877	NANOG{mouse}.p2	AK002602|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	BC058516|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK154758|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK166314|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	BC100439|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK003282|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	NM_025598|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK012327|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK012037|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK014211|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	BC029225|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	BC091753|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK012545|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene
mm9_v1_chr6_-_54543167_54543172	0.203713	NANOG{mouse}.p2	AK030620|Fkbp14|231997|FK506 binding protein 14
mm9_v1_chr5_+_20878459_20878530	0.202191	NANOG{mouse}.p2	AK009500|Fgl2|14190|fibrinogen-like protein 2	BC028893|Fgl2|14190|fibrinogen-like protein 2	NM_008013|Fgl2|14190|fibrinogen-like protein 2	AK036402|Fgl2|14190|fibrinogen-like protein 2	AK036784|Fgl2|14190|fibrinogen-like protein 2
mm9_v1_chr2_-_80421054_80421454	0.200755	NANOG{mouse}.p2	AK195509|Nckap1|50884|NCK-associated protein 1	AK191629|Nckap1|50884|NCK-associated protein 1	AK194160|Nckap1|50884|NCK-associated protein 1	AK198467|Nckap1|50884|NCK-associated protein 1	AK204199|Nckap1|50884|NCK-associated protein 1	AK213144|Nckap1|50884|NCK-associated protein 1	BC127067|Nckap1|50884|NCK-associated protein 1	AJ534525|Nckap1|50884|NCK-associated protein 1	NM_016965|Nckap1|50884|NCK-associated protein 1	BC060197|Nckap1|50884|NCK-associated protein 1
mm9_v1_chr2_-_72817311_72817337	0.198004	NANOG{mouse}.p2	AK088238|Sp3|20687|trans-acting transcription factor 3	NM_001098425|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr8_-_81344956_81345026	0.196836	NANOG{mouse}.p2	BC099484|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC098230|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC030427|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK141884|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK078392|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK161686|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK019126|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr6_+_47827641_47827690	0.196055	NANOG{mouse}.p2	AK030516|Zfp282|101095|zinc finger protein 282	AK081854|Zfp282|101095|zinc finger protein 282	BC025581|Zfp282|101095|zinc finger protein 282
mm9_v1_chr16_-_17928207_17928265	0.195866	NANOG{mouse}.p2	AK005070|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	BC037087|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chrX_+_110411860_110411875	0.19553	NANOG{mouse}.p2	AK045154|Dach2|93837|dachshund 2 (Drosophila)	NM_001142570|Dach2|93837|dachshund 2 (Drosophila)	NM_033605|Dach2|93837|dachshund 2 (Drosophila)	AF257217|Dach2|93837|dachshund 2 (Drosophila)	BC059233|Dach2|93837|dachshund 2 (Drosophila)
mm9_v1_chr7_+_29135727_29135780	0.194235	NANOG{mouse}.p2	AK011060|Rps16|20055|ribosomal protein S16	AK010613|Rps16|20055|ribosomal protein S16	AK010641|Rps16|20055|ribosomal protein S16	AK002904|Rps16|20055|ribosomal protein S16	AK088413|Rps16|20055|ribosomal protein S16	AK088716|Rps16|20055|ribosomal protein S16	AK169328|Rps16|20055|ribosomal protein S16	AK019400|Rps16|20055|ribosomal protein S16	AK083946|Rps16|20055|ribosomal protein S16	AK150808|Rps16|20055|ribosomal protein S16	AK168207|Rps16|20055|ribosomal protein S16	AK150615|Rps16|20055|ribosomal protein S16
mm9_v1_chr19_-_47611490_47611555	0.193575	NANOG{mouse}.p2	AK075574|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	NM_175360|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK180038|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK164386|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK135228|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	BC029548|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1
mm9_v1_chr5_-_34278864_34278941	0.191998	NANOG{mouse}.p2	AF101435|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	BC038003|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK137949|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK078760|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	NM_011914|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK144173|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK088384|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)
mm9_v1_chr2_-_72931338_72931457	0.189157	NANOG{mouse}.p2	
mm9_v1_chr11_-_69485842_69485924	0.188711	NANOG{mouse}.p2	NM_001159375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	NM_144958|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr3_+_96836314_96836366	0.184472	NANOG{mouse}.p2	AY390401|Gja5|14613|gap junction protein, alpha 5	BC053054|Gja5|14613|gap junction protein, alpha 5	NM_008121|Gja5|14613|gap junction protein, alpha 5	AK137069|Gja5|14613|gap junction protein, alpha 5
mm9_v1_chr17_+_3482314_3482460	0.182907	NANOG{mouse}.p2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr2_-_33742951_33742994	0.182507	NANOG{mouse}.p2	AK012178|Fam125b|72543|family with sequence similarity 125, member B	AK154267|Fam125b|72543|family with sequence similarity 125, member B	BC049129|Fam125b|72543|family with sequence similarity 125, member B	AK087821|Fam125b|72543|family with sequence similarity 125, member B	AK131113|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chr10_+_127740390_127740482	0.180394	NANOG{mouse}.p2	AK089001|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	NM_133992|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC075686|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK004773|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK048418|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK153343|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC079841|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK161547|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK047887|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK157800|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC020158|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC008521|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK034635|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr6_-_30340952_30341009	0.179234	NANOG{mouse}.p2	BC037445|Zc3hc1|232679|zinc finger, C3HC type 1	AJ537495|Zc3hc1|232679|zinc finger, C3HC type 1	AK151694|Zc3hc1|232679|zinc finger, C3HC type 1	BC050141|Zc3hc1|232679|zinc finger, C3HC type 1	AK088527|Zc3hc1|232679|zinc finger, C3HC type 1	AK167465|Zc3hc1|232679|zinc finger, C3HC type 1	NM_172735|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr15_-_82075137_82075176	0.17814	NANOG{mouse}.p2	AY243536|Cenpm|66570|centromere protein M	AY243537|Cenpm|66570|centromere protein M	AK011191|Cenpm|66570|centromere protein M	BC009160|Cenpm|66570|centromere protein M	AK168203|Cenpm|66570|centromere protein M	AK011227|Cenpm|66570|centromere protein M	AK011793|Cenpm|66570|centromere protein M	AK011755|Cenpm|66570|centromere protein M	AK010885|Cenpm|66570|centromere protein M	AK017679|Cenpm|66570|centromere protein M	AK011464|Cenpm|66570|centromere protein M	NM_025639|Cenpm|66570|centromere protein M	NM_178269|Cenpm|66570|centromere protein M
mm9_v1_chr14_+_51716032_51716087	0.176739	NANOG{mouse}.p2	AY762362|Rnase4|58809|ribonuclease, RNase A family 4	AK050451|Rnase4|58809|ribonuclease, RNase A family 4	BC055355|Ang|11727|angiogenin, ribonuclease, RNase A family, 5
mm9_v1_chr13_+_30228397_30228535	0.175161	NANOG{mouse}.p2	BC024653|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK020281|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK033388|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK137755|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK146984|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AB297382|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AB305045|Mboat1|218121|membrane bound O-acyltransferase domain containing 1
mm9_v1_chr7_+_29595894_29595998	0.172123	NANOG{mouse}.p2	NM_177301|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L	BC099683|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L	BC027206|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L	AK144684|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L	AK085906|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L
mm9_v1_chr5_+_77380762_77380839	0.170713	NANOG{mouse}.p2	AK002669|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK079282|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK166264|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK013426|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK075949|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK010462|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	BC018153|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm9_v1_chr5_+_91360248_91360293	0.170019	NANOG{mouse}.p2	BC054409|Mthfd2l|665563|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	AK049901|Mthfd2l|665563|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
mm9_v1_chr14_-_71166340_71166465	0.168397	NANOG{mouse}.p2	AJ297360|Xpo7|65246|exportin 7	AK041768|Xpo7|65246|exportin 7	AK051105|Xpo7|65246|exportin 7	AK035775|Xpo7|65246|exportin 7	BC029702|Xpo7|65246|exportin 7	AK164595|Xpo7|65246|exportin 7	NM_023045|Xpo7|65246|exportin 7
mm9_v1_chr1_-_194681914_194681945	0.165396	NANOG{mouse}.p2	BC060251|Sertad4|214791|SERTA domain containing 4	NM_198247|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr3_+_60432922_60432975	0.165081	NANOG{mouse}.p2	AK166145|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr18_-_46685557_46685627	0.162272	NANOG{mouse}.p2	AK129440|Fem1c|240263|fem-1 homolog c (C.elegans)	AK049336|Fem1c|240263|fem-1 homolog c (C.elegans)	AK028330|Fem1c|240263|fem-1 homolog c (C.elegans)	NM_173423|Fem1c|240263|fem-1 homolog c (C.elegans)
mm9_v1_chr5_-_45190731_45190836	0.160568	NANOG{mouse}.p2	AB221652|Ldb2|16826|LIM domain binding 2
mm9_v1_chr19_+_46380107_46380288	0.15979	NANOG{mouse}.p2	AF155373|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	NM_019408|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK145312|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100
mm9_v1_chr12_+_8320219_8320268	0.159254	NANOG{mouse}.p2	AK040654|Hs1bp3|58240|HCLS1 binding protein 3	NM_021429|Hs1bp3|58240|HCLS1 binding protein 3	AK154696|Hs1bp3|58240|HCLS1 binding protein 3	AK084802|Hs1bp3|58240|HCLS1 binding protein 3	AK170838|Hs1bp3|58240|HCLS1 binding protein 3	BC095977|Hs1bp3|58240|HCLS1 binding protein 3	AJ132192|Hs1bp3|58240|HCLS1 binding protein 3
mm9_v1_chr14_-_65716907_65716928	0.158011	NANOG{mouse}.p2	
mm9_v1_chr2_-_92232506_92232632	0.156396	NANOG{mouse}.p2	AF109769|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109770|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109771|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr16_+_55966387_55966447	0.155807	NANOG{mouse}.p2	NM_024218|Rpl24|68193|ribosomal protein L24
mm9_v1_chr4_+_15211137_15211173	0.152646	NANOG{mouse}.p2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr9_+_56266415_56266485	0.152587	NANOG{mouse}.p2	AK017716|Hmg20a|66867|high mobility group 20A	AK129010|Hmg20a|66867|high mobility group 20A	AK134213|Hmg20a|66867|high mobility group 20A
mm9_v1_chr17_+_21520684_21520739	0.152259	NANOG{mouse}.p2	AK043955|Zfp677|210503|zinc finger protein 677	NM_172486|Zfp677|210503|zinc finger protein 677	BC057947|Zfp677|210503|zinc finger protein 677
mm9_v1_chr4_+_123582074_123582311	0.151759	NANOG{mouse}.p2	BC048478|Mycbp|56309|c-myc binding protein	AK033289|Mycbp|56309|c-myc binding protein	AK077633|Mycbp|56309|c-myc binding protein	AK037661|Mycbp|56309|c-myc binding protein	AK077762|Mycbp|56309|c-myc binding protein	AK077995|Mycbp|56309|c-myc binding protein	AK145773|Mycbp|56309|c-myc binding protein	NM_019660|Mycbp|56309|c-myc binding protein	BC028344|Mycbp|56309|c-myc binding protein	AB015858|Mycbp|56309|c-myc binding protein
mm9_v1_chr17_-_25922267_25922279	0.151449	NANOG{mouse}.p2	AK005274|Haghl|68977|hydroxyacylglutathione hydrolase-like	NM_026897|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK079632|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr19_-_29436298_29436382	0.149898	NANOG{mouse}.p2	AK219906|5033414D02Rik|67759|RIKEN cDNA 5033414D02 gene	BC024953|5033414D02Rik|67759|RIKEN cDNA 5033414D02 gene	AK168454|5033414D02Rik|67759|RIKEN cDNA 5033414D02 gene	AK170700|5033414D02Rik|67759|RIKEN cDNA 5033414D02 gene	AK017215|5033414D02Rik|67759|RIKEN cDNA 5033414D02 gene	NM_026362|5033414D02Rik|67759|RIKEN cDNA 5033414D02 gene	AK003543|5033414D02Rik|67759|RIKEN cDNA 5033414D02 gene	AK017171|5033414D02Rik|67759|RIKEN cDNA 5033414D02 gene
mm9_v1_chr19_+_6276885_6276962	0.149757	NANOG{mouse}.p2	AK171047|Ehd1|13660|EH-domain containing 1	NM_010119|Ehd1|13660|EH-domain containing 1	AF173156|Ehd1|13660|EH-domain containing 1	AK167721|Ehd1|13660|EH-domain containing 1	AF099186|Ehd1|13660|EH-domain containing 1	AK154651|Ehd1|13660|EH-domain containing 1	AK160535|Ehd1|13660|EH-domain containing 1	AK166701|Ehd1|13660|EH-domain containing 1	AK159943|Ehd1|13660|EH-domain containing 1	AK077536|Ehd1|13660|EH-domain containing 1	AK012896|Ehd1|13660|EH-domain containing 1	AK159191|Ehd1|13660|EH-domain containing 1	AK168610|Ehd1|13660|EH-domain containing 1	AK172539|Ehd1|13660|EH-domain containing 1	BC043332|Ehd1|13660|EH-domain containing 1	BC037094|Ehd1|13660|EH-domain containing 1	BC054828|Ehd1|13660|EH-domain containing 1	AK152821|Ehd1|13660|EH-domain containing 1
mm9_v1_chr2_-_26766145_26766181	0.14872	NANOG{mouse}.p2	BC018225|Med22|20933|mediator complex subunit 22	NM_001033908|Med22|20933|mediator complex subunit 22	NM_011513|Med22|20933|mediator complex subunit 22
mm9_v1_chr8_-_81345034_81345050	0.148553	NANOG{mouse}.p2	AK158236|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_001191004|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_030145|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr7_-_133935952_133936049	0.147088	NANOG{mouse}.p2	BC001993|Ppp4c|56420|protein phosphatase 4, catalytic subunit	NM_019674|Ppp4c|56420|protein phosphatase 4, catalytic subunit	AF088911|Ppp4c|56420|protein phosphatase 4, catalytic subunit	BC013806|Ppp4c|56420|protein phosphatase 4, catalytic subunit
mm9_v1_chr19_+_22767298_22767313	0.145938	NANOG{mouse}.p2	AK052064|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK084402|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK044533|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK051934|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr12_+_17273358_17273435	0.145464	NANOG{mouse}.p2	AK167386|Pdia6|71853|protein disulfide isomerase associated 6	AK152960|Pdia6|71853|protein disulfide isomerase associated 6	AK005989|Pdia6|71853|protein disulfide isomerase associated 6	AK133792|Pdia6|71853|protein disulfide isomerase associated 6	AK166111|Pdia6|71853|protein disulfide isomerase associated 6	AK168136|Pdia6|71853|protein disulfide isomerase associated 6	AK168279|Pdia6|71853|protein disulfide isomerase associated 6	AK076558|Pdia6|71853|protein disulfide isomerase associated 6	NM_027959|Pdia6|71853|protein disulfide isomerase associated 6	BC006865|Pdia6|71853|protein disulfide isomerase associated 6	AK151008|Pdia6|71853|protein disulfide isomerase associated 6	AK165877|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr7_+_125884231_125884271	0.145399	NANOG{mouse}.p2	AK136140|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK018573|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK050302|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK011615|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK135249|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	BC054720|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene
mm9_v1_chr11_-_120504978_120505082	0.145218	NANOG{mouse}.p2	AK139185|Pycr1|209027|pyrroline-5-carboxylate reductase 1	NM_144795|Pycr1|209027|pyrroline-5-carboxylate reductase 1	BC006727|Pycr1|209027|pyrroline-5-carboxylate reductase 1
mm9_v1_chr2_+_174153230_174153414	0.145196	NANOG{mouse}.p2	AK020895|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF124383|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK086715|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC062654|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY682719|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr8_-_8661060_8661191	0.142354	NANOG{mouse}.p2	BC057009|Efnb2|13642|ephrin B2	AK132845|Efnb2|13642|ephrin B2
mm9_v1_chr8_+_131256428_131256477	0.142099	NANOG{mouse}.p2	AK008343|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr4_-_126645129_126645179	0.140059	NANOG{mouse}.p2	AK148366|Zmym4|67785|zinc finger, MYM-type 4	NM_001114399|Zmym4|67785|zinc finger, MYM-type 4
mm9_v1_chr11_+_62062462_62062711	0.139721	NANOG{mouse}.p2	AK047002|Adora2b|11541|adenosine A2b receptor	NM_007413|Adora2b|11541|adenosine A2b receptor	AK080759|Adora2b|11541|adenosine A2b receptor	BC116415|Adora2b|11541|adenosine A2b receptor	BC116416|Adora2b|11541|adenosine A2b receptor	U05673|Adora2b|11541|adenosine A2b receptor	AK077289|Adora2b|11541|adenosine A2b receptor
mm9_v1_chr19_+_22767272_22767282	0.137857	NANOG{mouse}.p2	AK053673|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK046908|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK077331|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK082141|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK142504|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK161909|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK163890|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr6_-_124694973_124695025	0.136783	NANOG{mouse}.p2	BC022946|Atn1|13498|atrophin 1
mm9_v1_chrX_-_140261831_140261910	0.136758	NANOG{mouse}.p2	BC052167|Capn6|12338|calpain 6	Y12582|Capn6|12338|calpain 6	AK048028|Capn6|12338|calpain 6
mm9_v1_chrX_+_103222548_103222685	0.136539	NANOG{mouse}.p2	AK017506|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK033254|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_001109757|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_009726|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK155643|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK171563|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK172209|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U03434|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U71091|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	BC141395|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide
mm9_v1_chr12_+_30687597_30687686	0.13451	NANOG{mouse}.p2	BC037709|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr14_-_61979128_61979283	0.133505	NANOG{mouse}.p2	AK019140|Ebpl|68177|emopamil binding protein-like	AK044618|Ebpl|68177|emopamil binding protein-like	AF243434|Ebpl|68177|emopamil binding protein-like	AK011237|Ebpl|68177|emopamil binding protein-like	AK163371|Ebpl|68177|emopamil binding protein-like	AK032534|Ebpl|68177|emopamil binding protein-like	BC027422|Ebpl|68177|emopamil binding protein-like	AK019963|Ebpl|68177|emopamil binding protein-like	NM_026598|Ebpl|68177|emopamil binding protein-like
mm9_v1_chr5_-_31350374_31350626	0.132983	NANOG{mouse}.p2	AK161633|Slc5a6|330064|solute carrier family 5 (sodium-dependent vitamin transporter), member 6	NM_177870|Slc5a6|330064|solute carrier family 5 (sodium-dependent vitamin transporter), member 6	AK088682|Slc5a6|330064|solute carrier family 5 (sodium-dependent vitamin transporter), member 6
mm9_v1_chr8_+_73988823_73988883	0.127925	NANOG{mouse}.p2	NM_053162|Mrpl34|94065|mitochondrial ribosomal protein L34	BC052086|Mrpl34|94065|mitochondrial ribosomal protein L34	AB049653|Mrpl34|94065|mitochondrial ribosomal protein L34	BC056979|Mrpl34|94065|mitochondrial ribosomal protein L34	AK018724|Mrpl34|94065|mitochondrial ribosomal protein L34	AK170156|Mrpl34|94065|mitochondrial ribosomal protein L34
mm9_v1_chrX_+_7476460_7476569	0.126487	NANOG{mouse}.p2	AK151396|Timm17b|21855|translocase of inner mitochondrial membrane 17b	AK150836|Timm17b|21855|translocase of inner mitochondrial membrane 17b	AK009164|Timm17b|21855|translocase of inner mitochondrial membrane 17b	AK011830|Timm17b|21855|translocase of inner mitochondrial membrane 17b	AK049584|Timm17b|21855|translocase of inner mitochondrial membrane 17b	AK153097|Timm17b|21855|translocase of inner mitochondrial membrane 17b	NM_011591|Timm17b|21855|translocase of inner mitochondrial membrane 17b	AK184288|Timm17b|21855|translocase of inner mitochondrial membrane 17b	BC008275|Timm17b|21855|translocase of inner mitochondrial membrane 17b	AK003204|Timm17b|21855|translocase of inner mitochondrial membrane 17b	AF106621|Timm17b|21855|translocase of inner mitochondrial membrane 17b
mm9_v1_chr15_+_58247016_58247063	0.12594	NANOG{mouse}.p2	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr8_+_73051648_73051650	0.125655	NANOG{mouse}.p2	AK153000|Fkbp8|14232|FK506 binding protein 8	AK165281|Fkbp8|14232|FK506 binding protein 8	AK146122|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr16_-_17928270_17928336	0.125403	NANOG{mouse}.p2	AK159289|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	AK170191|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	NM_153150|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chr15_+_10994444_10994583	0.125142	NANOG{mouse}.p2	AK145096|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK135354|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	NM_175501|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK054015|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	AK048612|Adamts12|239337|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
mm9_v1_chr12_+_87582805_87582876	0.124726	NANOG{mouse}.p2	BC048169|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK031712|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK006185|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	BC058256|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	NM_027405|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK147916|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	BC050782|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene	AK129299|1700020O03Rik|70373|RIKEN cDNA 1700020O03 gene
mm9_v1_chr13_-_93253967_93253985	0.124634	NANOG{mouse}.p2	AK015100|Fam151b|73942|family with sequence similarity 151, member B	AK162422|Fam151b|73942|family with sequence similarity 151, member B	NM_001163627|Fam151b|73942|family with sequence similarity 151, member B
mm9_v1_chr8_-_119445305_119445353	0.123183	NANOG{mouse}.p2	BC027549|2310061C15Rik|66531|RIKEN cDNA 2310061C15 gene	AK009995|2310061C15Rik|66531|RIKEN cDNA 2310061C15 gene	AK010073|2310061C15Rik|66531|RIKEN cDNA 2310061C15 gene	AK013475|2310061C15Rik|66531|RIKEN cDNA 2310061C15 gene	AK002429|2310061C15Rik|66531|RIKEN cDNA 2310061C15 gene	NM_026844|2310061C15Rik|66531|RIKEN cDNA 2310061C15 gene	AK004189|2310061C15Rik|66531|RIKEN cDNA 2310061C15 gene
mm9_v1_chr8_+_4613206_4613229	0.120881	NANOG{mouse}.p2	BC138223|Zfp958|233987|zinc finger protein 958	BC145996|Zfp958|233987|zinc finger protein 958
mm9_v1_chr7_+_148401731_148401771	0.120624	NANOG{mouse}.p2	AK010305|Rassf7|66985|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	NM_025886|Rassf7|66985|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm9_v1_chr19_+_37450854_37450917	0.120553	NANOG{mouse}.p2	AK147754|Kif11|16551|kinesin family member 11	BC060670|Kif11|16551|kinesin family member 11	NM_010615|Kif11|16551|kinesin family member 11	AK083324|Kif11|16551|kinesin family member 11
mm9_v1_chr2_-_33743465_33743465	0.118337	NANOG{mouse}.p2	BC059907|Fam125b|72543|family with sequence similarity 125, member B	NM_175184|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chr10_-_67741461_67741487	0.117896	NANOG{mouse}.p2	AK029818|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AK031596|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AK017396|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	NM_023598|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AF280065|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)
mm9_v1_chr14_+_76510684_76510739	0.116075	NANOG{mouse}.p2	AK032324|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	NM_013745|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AK156205|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AK009260|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	BC020364|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	BC056192|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AF159549|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1
mm9_v1_chr5_+_77380332_77380435	0.113897	NANOG{mouse}.p2	AK146722|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	BC052691|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	NM_025939|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm9_v1_chr5_+_130090042_130090115	0.113572	NANOG{mouse}.p2	BC051917|Mmp17|23948|matrix metallopeptidase 17	NM_011846|Mmp17|23948|matrix metallopeptidase 17	AB021224|Mmp17|23948|matrix metallopeptidase 17	AK143521|Mmp17|23948|matrix metallopeptidase 17	AJ010731|Mmp17|23948|matrix metallopeptidase 17
mm9_v1_chr7_+_25378887_25378951	0.111964	NANOG{mouse}.p2	BC010592|Ethe1|66071|ethylmalonic encephalopathy 1	AK002666|Ethe1|66071|ethylmalonic encephalopathy 1	AB049623|Ethe1|66071|ethylmalonic encephalopathy 1	BC083162|Ethe1|66071|ethylmalonic encephalopathy 1
mm9_v1_chr11_-_116714173_116714405	0.111129	NANOG{mouse}.p2	AK204489|Srsf2|20382|serine/arginine-rich splicing factor 2	L13610|Srsf2|20382|serine/arginine-rich splicing factor 2	BC005493|Srsf2|20382|serine/arginine-rich splicing factor 2	AF077858|Srsf2|20382|serine/arginine-rich splicing factor 2	U14648|Srsf2|20382|serine/arginine-rich splicing factor 2	AK161873|Srsf2|20382|serine/arginine-rich splicing factor 2	AK011528|Srsf2|20382|serine/arginine-rich splicing factor 2	AK076448|Srsf2|20382|serine/arginine-rich splicing factor 2	AK086103|Srsf2|20382|serine/arginine-rich splicing factor 2	AK088042|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr12_+_70285127_70285208	0.11101	NANOG{mouse}.p2	AK171000|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	NM_146035|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK152925|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK159185|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK166037|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK083370|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	BC010583|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	BC027169|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK151964|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK153382|Mgat2|217664|mannoside acetylglucosaminyltransferase 2
mm9_v1_chr4_-_134828503_134828682	0.108192	NANOG{mouse}.p2	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr17_+_36005333_36005386	0.106665	NANOG{mouse}.p2	AK154854|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene
mm9_v1_chr18_-_6490682_6490821	0.105548	NANOG{mouse}.p2	BC138622|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	BC138623|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AK010295|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr9_+_44287171_44287176	0.104485	NANOG{mouse}.p2	AK078316|C030014I23Rik|77381|RIKEN cDNA C030014I23 gene
mm9_v1_chr11_-_76057153_76057185	0.103287	NANOG{mouse}.p2	AK010992|Glod4|67201|glyoxalase domain containing 4	AK007439|Glod4|67201|glyoxalase domain containing 4	AK138073|Glod4|67201|glyoxalase domain containing 4	AK012569|Glod4|67201|glyoxalase domain containing 4	AK013212|Glod4|67201|glyoxalase domain containing 4
mm9_v1_chr17_-_71339826_71339901	0.103017	NANOG{mouse}.p2	BC099425|Myl12b|67938|myosin, light chain 12B, regulatory	BC131925|Myl12b|67938|myosin, light chain 12B, regulatory	BC131927|Myl12b|67938|myosin, light chain 12B, regulatory	BC028878|Myl12b|67938|myosin, light chain 12B, regulatory	AK002885|Myl12b|67938|myosin, light chain 12B, regulatory	AK168316|Myl12b|67938|myosin, light chain 12B, regulatory	NM_023402|Myl12b|67938|myosin, light chain 12B, regulatory	AK146115|Myl12b|67938|myosin, light chain 12B, regulatory	AK005133|Myl12b|67938|myosin, light chain 12B, regulatory	AK160123|Myl12b|67938|myosin, light chain 12B, regulatory
mm9_v1_chr3_+_89225539_89225564	0.102616	NANOG{mouse}.p2	NM_001113331|Shc1|20416|src homology 2 domain-containing transforming protein C1	AK155158|Shc1|20416|src homology 2 domain-containing transforming protein C1
mm9_v1_chr15_-_89422293_89422353	0.102348	NANOG{mouse}.p2	AK170205|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK004012|Rabl2|68708|RAB, member of RAS oncogene family-like 2	BC030376|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK051232|Rabl2|68708|RAB, member of RAS oncogene family-like 2	NM_026817|Rabl2|68708|RAB, member of RAS oncogene family-like 2
mm9_v1_chr5_-_28117760_28117935	0.102194	NANOG{mouse}.p2	AK198400|Paxip1|55982|PAX interacting (with transcription-activation domain) protein 1	BC066014|Paxip1|55982|PAX interacting (with transcription-activation domain) protein 1	NM_018878|Paxip1|55982|PAX interacting (with transcription-activation domain) protein 1	AK148141|Paxip1|55982|PAX interacting (with transcription-activation domain) protein 1
mm9_v1_chr6_-_6167113_6167172	0.101542	NANOG{mouse}.p2	AK151180|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK152237|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AF164632|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK150496|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_001177572|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_015829|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr10_-_78054639_78054708	0.101467	NANOG{mouse}.p2	AK004654|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	NM_027875|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm9_v1_chr18_+_37828606_37828758	0.101402	NANOG{mouse}.p2	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr6_+_113573980_113574047	0.100875	NANOG{mouse}.p2	AK159238|Vhl|22346|von Hippel-Lindau tumor suppressor	U12570|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171604|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171264|Vhl|22346|von Hippel-Lindau tumor suppressor	NM_009507|Vhl|22346|von Hippel-Lindau tumor suppressor	S76748|Vhl|22346|von Hippel-Lindau tumor suppressor	BC052417|Vhl|22346|von Hippel-Lindau tumor suppressor	AK161408|Vhl|22346|von Hippel-Lindau tumor suppressor
mm9_v1_chr4_-_46417054_46417104	0.0993719	NANOG{mouse}.p2	AF269248|Hemgn|93966|hemogen	NM_053149|Hemgn|93966|hemogen	AK171906|Hemgn|93966|hemogen
mm9_v1_chr12_-_15823590_15823683	0.098817	NANOG{mouse}.p2	NM_144551|Trib2|217410|tribbles homolog 2 (Drosophila)	AK144192|Trib2|217410|tribbles homolog 2 (Drosophila)
mm9_v1_chr5_-_92864088_92864269	0.0985451	NANOG{mouse}.p2	AK150841|Nup54|269113|nucleoporin 54	AK151896|Nup54|269113|nucleoporin 54	AK152136|Nup54|269113|nucleoporin 54	BC068114|Nup54|269113|nucleoporin 54	AK014260|Nup54|269113|nucleoporin 54	AK087827|Nup54|269113|nucleoporin 54	BC044303|Nup54|269113|nucleoporin 54	AK088855|Nup54|269113|nucleoporin 54	AK150182|Nup54|269113|nucleoporin 54	AK162037|Nup54|269113|nucleoporin 54	AK133841|Nup54|269113|nucleoporin 54	NM_183392|Nup54|269113|nucleoporin 54
mm9_v1_chr11_-_79068138_79068204	0.0963255	NANOG{mouse}.p2	AK150600|Wsb1|78889|WD repeat and SOCS box-containing 1	AK159905|Wsb1|78889|WD repeat and SOCS box-containing 1	AK146752|Wsb1|78889|WD repeat and SOCS box-containing 1	AK150394|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167942|Wsb1|78889|WD repeat and SOCS box-containing 1	AK169058|Wsb1|78889|WD repeat and SOCS box-containing 1	AK019206|Wsb1|78889|WD repeat and SOCS box-containing 1	AK152545|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167174|Wsb1|78889|WD repeat and SOCS box-containing 1	AK145974|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167394|Wsb1|78889|WD repeat and SOCS box-containing 1	AK168468|Wsb1|78889|WD repeat and SOCS box-containing 1	AK168565|Wsb1|78889|WD repeat and SOCS box-containing 1	NM_019653|Wsb1|78889|WD repeat and SOCS box-containing 1
mm9_v1_chr6_+_35127603_35127646	0.0959636	NANOG{mouse}.p2	AK014419|Nup205|70699|nucleoporin 205	NM_027513|Nup205|70699|nucleoporin 205	AK087717|Nup205|70699|nucleoporin 205	AK148473|Nup205|70699|nucleoporin 205	BC058729|Nup205|70699|nucleoporin 205
mm9_v1_chr11_-_69485800_69485832	0.0955731	NANOG{mouse}.p2	BC099392|Eif4a1|13681|eukaryotic translation initiation factor 4A1	BC012282|Eif4a1|13681|eukaryotic translation initiation factor 4A1	BC049915|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169030|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166527|Eif4a1|13681|eukaryotic translation initiation factor 4A1	X03039|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK159643|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167205|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK168697|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169156|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK011529|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK077429|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK135752|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK135994|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK144850|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK146464|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166439|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167003|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167083|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167988|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK168780|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169023|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169057|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169279|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166572|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK088124|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK145375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK145508|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK146424|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK152694|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK162017|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166674|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167196|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167906|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK010644|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr6_+_47827735_47827748	0.0954146	NANOG{mouse}.p2	AK188102|Zfp282|101095|zinc finger protein 282
mm9_v1_chr6_+_29325052_29325077	0.0950181	NANOG{mouse}.p2	AF177023|Calu|12321|calumenin
mm9_v1_chr14_+_34767188_34767245	0.094997	NANOG{mouse}.p2	BC083133|Rbp3|19661|retinol binding protein 3, interstitial	BC017610|Rbp3|19661|retinol binding protein 3, interstitial	NM_015745|Rbp3|19661|retinol binding protein 3, interstitial	BC040282|Rbp3|19661|retinol binding protein 3, interstitial	BC042480|Rbp3|19661|retinol binding protein 3, interstitial
mm9_v1_chr9_-_34983552_34983647	0.0947897	NANOG{mouse}.p2	AK171018|Dcps|69305|decapping enzyme, scavenger	AK005584|Dcps|69305|decapping enzyme, scavenger	NM_027030|Dcps|69305|decapping enzyme, scavenger	AY040775|Dcps|69305|decapping enzyme, scavenger	AK169641|Dcps|69305|decapping enzyme, scavenger	BC016273|Dcps|69305|decapping enzyme, scavenger	AK078253|Dcps|69305|decapping enzyme, scavenger
mm9_v1_chr18_+_36446680_36446818	0.0944188	NANOG{mouse}.p2	AF017631|Pura|19290|purine rich element binding protein A
mm9_v1_chr10_-_36858671_36858801	0.0942888	NANOG{mouse}.p2	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chrX_+_136219520_136219539	0.0942815	NANOG{mouse}.p2	NM_001081499|Tbc1d8b|245638|TBC1 domain family, member 8B
mm9_v1_chr4_+_125724217_125724220	0.0942445	NANOG{mouse}.p2	AK005131|Mrps15|66407|mitochondrial ribosomal protein S15	AK008623|Mrps15|66407|mitochondrial ribosomal protein S15
mm9_v1_chr17_+_28465521_28465543	0.0937689	NANOG{mouse}.p2	AK151172|Rpl10a|19896|ribosomal protein L10A	AK150743|Rpl10a|19896|ribosomal protein L10A	AK153863|Rpl10a|19896|ribosomal protein L10A	U12403|Rpl10a|19896|ribosomal protein L10A
mm9_v1_chr9_-_64020685_64020737	0.0935786	NANOG{mouse}.p2	BC027435|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK050917|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK009559|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK019825|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK012004|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	NM_026507|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)
mm9_v1_chr7_-_151008681_151008745	0.0935164	NANOG{mouse}.p2	BC038016|Nadsyn1|78914|NAD synthetase 1	BC018248|Nadsyn1|78914|NAD synthetase 1	AK042389|Nadsyn1|78914|NAD synthetase 1	AK041101|Nadsyn1|78914|NAD synthetase 1	AK045774|Nadsyn1|78914|NAD synthetase 1	AK046491|Nadsyn1|78914|NAD synthetase 1	AJ305343|Nadsyn1|78914|NAD synthetase 1	AK020264|Nadsyn1|78914|NAD synthetase 1	NM_030221|Nadsyn1|78914|NAD synthetase 1
mm9_v1_chr11_+_67090625_67090855	0.0933506	NANOG{mouse}.p2	NM_177369|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021877|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021876|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	BC150737|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK029328|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK081482|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK087387|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AY963802|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021878|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal
mm9_v1_chr7_+_80536124_80536202	0.0920758	NANOG{mouse}.p2	AJ557513|Rgma|244058|RGM domain family, member A	AK145224|Rgma|244058|RGM domain family, member A	AK160661|Rgma|244058|RGM domain family, member A	AK141860|Rgma|244058|RGM domain family, member A
mm9_v1_chr7_-_87532756_87532844	0.0920173	NANOG{mouse}.p2	BC100306|Fes|14159|feline sarcoma oncogene	AK170418|Fes|14159|feline sarcoma oncogene	AK143639|Fes|14159|feline sarcoma oncogene	AK004587|Fes|14159|feline sarcoma oncogene	AK155861|Fes|14159|feline sarcoma oncogene	NM_010194|Fes|14159|feline sarcoma oncogene	BC038130|Fes|14159|feline sarcoma oncogene
mm9_v1_chr9_+_72887524_72887561	0.0919904	NANOG{mouse}.p2	AK009244|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene	AK003016|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene	AK019875|5031420N21Rik|78815|RIKEN cDNA 5031420N21 gene	BC037369|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene
mm9_v1_chr6_+_125045998_125046234	0.09193	NANOG{mouse}.p2	AK147695|Chd4|107932|chromodomain helicase DNA binding protein 4	AK040005|Chd4|107932|chromodomain helicase DNA binding protein 4	AK132004|Chd4|107932|chromodomain helicase DNA binding protein 4	BC058578|Chd4|107932|chromodomain helicase DNA binding protein 4	NM_145979|Chd4|107932|chromodomain helicase DNA binding protein 4	AK145532|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr5_+_123794456_123794498	0.0919275	NANOG{mouse}.p2	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr17_+_56442759_56442848	0.0918831	NANOG{mouse}.p2	NM_001111079|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	NM_010931|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	AK146951|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	AK145543|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	AK147046|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	BC022167|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	AF274046|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	D87908|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1
mm9_v1_chr16_+_55966458_55966533	0.0916783	NANOG{mouse}.p2	AK028209|Rpl24|68193|ribosomal protein L24	AK018731|Rpl24|68193|ribosomal protein L24	AK136631|Rpl24|68193|ribosomal protein L24	AK019214|Rpl24|68193|ribosomal protein L24	AK077617|Rpl24|68193|ribosomal protein L24	BC053377|Rpl24|68193|ribosomal protein L24	BC058114|Rpl24|68193|ribosomal protein L24	BC092008|Rpl24|68193|ribosomal protein L24	BC002110|Rpl24|68193|ribosomal protein L24
mm9_v1_chr1_+_122498985_122498994	0.0912776	NANOG{mouse}.p2	AK140634|En1|13798|engrailed 1
mm9_v1_chr9_+_54798578_54798680	0.0911421	NANOG{mouse}.p2	AK168838|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AK085937|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AK150565|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AK166618|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AK168150|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	BC001982|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	NM_011966|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AF060093|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4
mm9_v1_chr14_-_76510534_76510637	0.0910188	NANOG{mouse}.p2	AK173238|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	BC029731|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK004707|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK082912|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	NM_026177|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK016681|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene
mm9_v1_chr17_+_35187325_35187400	0.0893456	NANOG{mouse}.p2	AK168262|Clic1|114584|chloride intracellular channel 1	AK088809|Clic1|114584|chloride intracellular channel 1
mm9_v1_chr6_-_51419881_51419892	0.089181	NANOG{mouse}.p2	AK049771|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AK137214|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_016806|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_182650|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr8_+_13339673_13339702	0.0884125	NANOG{mouse}.p2	NM_009361|Tfdp1|21781|transcription factor Dp 1	X72310|Tfdp1|21781|transcription factor Dp 1	BC132567|Tfdp1|21781|transcription factor Dp 1	BC132569|Tfdp1|21781|transcription factor Dp 1	BC145344|Tfdp1|21781|transcription factor Dp 1
mm9_v1_chr9_-_56008819_56008825	0.0883356	NANOG{mouse}.p2	AK159418|Tspan3|56434|tetraspanin 3
mm9_v1_chrX_-_133527570_133527593	0.0880788	NANOG{mouse}.p2	NM_001114179|Mcart6|67062|mitochondrial carrier triple repeat 6
mm9_v1_chr12_-_104116615_104116682	0.0862656	NANOG{mouse}.p2	BC041669|Btbd7|238386|BTB (POZ) domain containing 7	NM_172806|Btbd7|238386|BTB (POZ) domain containing 7	AK134271|Btbd7|238386|BTB (POZ) domain containing 7	AK033160|Btbd7|238386|BTB (POZ) domain containing 7
mm9_v1_chr17_+_5343877_5344040	0.0862213	NANOG{mouse}.p2	AK049919|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK021005|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK048918|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr12_-_76815494_76815519	0.0862121	NANOG{mouse}.p2	
mm9_v1_chr16_-_50432421_50432504	0.084621	NANOG{mouse}.p2	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr6_+_97160749_97160814	0.0845043	NANOG{mouse}.p2	AF421860|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK077826|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	NM_022992|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK076519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK088205|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF133912|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	BC003897|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK008519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK005259|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF265214|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5
mm9_v1_chr5_-_31262588_31262733	0.0841889	NANOG{mouse}.p2	BC017527|Preb|50907|prolactin regulatory element binding	AF150808|Preb|50907|prolactin regulatory element binding	AF193017|Preb|50907|prolactin regulatory element binding	AK029838|Preb|50907|prolactin regulatory element binding	AK036866|Preb|50907|prolactin regulatory element binding	AK013330|Preb|50907|prolactin regulatory element binding	AK151288|Preb|50907|prolactin regulatory element binding	NM_016703|Preb|50907|prolactin regulatory element binding
mm9_v1_chr10_-_61949345_61949552	0.0840762	NANOG{mouse}.p2	AK028096|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_001113355|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK086851|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK150244|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK151360|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC007148|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK149859|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC058236|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK147989|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK152424|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK165853|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	S41204|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK159783|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK167592|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168537|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168213|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_133672|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)
mm9_v1_chr14_+_29318658_29318741	0.0840576	NANOG{mouse}.p2	NM_009524|Wnt5a|22418|wingless-related MMTV integration site 5A	AK031597|Wnt5a|22418|wingless-related MMTV integration site 5A	M89798|Wnt5a|22418|wingless-related MMTV integration site 5A
mm9_v1_chr15_+_102162136_102162200	0.0838147	NANOG{mouse}.p2	NM_021713|Myg1|60315|melanocyte proliferating gene 1	AF289484|Myg1|60315|melanocyte proliferating gene 1	BC028501|Myg1|60315|melanocyte proliferating gene 1	AK017955|Myg1|60315|melanocyte proliferating gene 1	AK002656|Myg1|60315|melanocyte proliferating gene 1	AK004104|Myg1|60315|melanocyte proliferating gene 1	BC023124|Myg1|60315|melanocyte proliferating gene 1	AK013232|Myg1|60315|melanocyte proliferating gene 1
mm9_v1_chr11_-_31571811_31571918	0.081789	NANOG{mouse}.p2	NM_001024919|Bod1|69556|biorientation of chromosomes in cell division 1	BC116435|Bod1|69556|biorientation of chromosomes in cell division 1	BC116436|Bod1|69556|biorientation of chromosomes in cell division 1	BC128508|Bod1|69556|biorientation of chromosomes in cell division 1	BC128509|Bod1|69556|biorientation of chromosomes in cell division 1
mm9_v1_chr6_+_142294174_142294216	0.0816134	NANOG{mouse}.p2	AK148411|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	BC027061|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	BC022914|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	AK165677|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	NM_183165|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1
mm9_v1_chr9_+_108419410_108419495	0.0813418	NANOG{mouse}.p2	NM_001114119|Qrich1|69232|glutamine-rich 1	NM_175143|Qrich1|69232|glutamine-rich 1	AK083212|Qrich1|69232|glutamine-rich 1	BC006738|Qrich1|69232|glutamine-rich 1	AK151491|Qrich1|69232|glutamine-rich 1	AK151530|Qrich1|69232|glutamine-rich 1	BC120915|Qrich1|69232|glutamine-rich 1	BC120916|Qrich1|69232|glutamine-rich 1
mm9_v1_chr1_-_36502079_36502124	0.081104	NANOG{mouse}.p2	AK142024|Lman2l|214895|lectin, mannose-binding 2-like	BC046969|Lman2l|214895|lectin, mannose-binding 2-like	NM_001013374|Lman2l|214895|lectin, mannose-binding 2-like	BC027226|Lman2l|214895|lectin, mannose-binding 2-like	AK158015|Lman2l|214895|lectin, mannose-binding 2-like
mm9_v1_chr6_-_97010364_97010406	0.0809902	NANOG{mouse}.p2	BC089490|Fam19a4|320701|family with sequence similarity 19, member A4	AK081531|Fam19a4|320701|family with sequence similarity 19, member A4	AK084114|Fam19a4|320701|family with sequence similarity 19, member A4	NM_177233|Fam19a4|320701|family with sequence similarity 19, member A4	AK149355|Fam19a4|320701|family with sequence similarity 19, member A4
mm9_v1_chr9_+_59523404_59523469	0.0806427	NANOG{mouse}.p2	
mm9_v1_chr8_+_32260775_32260840	0.0806016	NANOG{mouse}.p2	AK045392|BC019943|234138|cDNA sequence BC019943	NM_001112729|BC019943|234138|cDNA sequence BC019943	NM_144927|BC019943|234138|cDNA sequence BC019943	AK084242|BC019943|234138|cDNA sequence BC019943	AK046031|BC019943|234138|cDNA sequence BC019943	AK139425|BC019943|234138|cDNA sequence BC019943
mm9_v1_chr19_-_46380070_46380120	0.0803974	NANOG{mouse}.p2	AK156394|4833438C02Rik|107243|RIKEN cDNA 4833438C02 gene	AK029443|4833438C02Rik|107243|RIKEN cDNA 4833438C02 gene
mm9_v1_chr17_+_56301899_56301970	0.0800464	NANOG{mouse}.p2	AK090348|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	NM_025566|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	AK150678|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	AK153177|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	AK011245|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	AK136962|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1
mm9_v1_chr14_+_122580904_122580944	0.079717	NANOG{mouse}.p2	NM_029556|Clybl|69634|citrate lyase beta like	BC023398|Clybl|69634|citrate lyase beta like	AK009345|Clybl|69634|citrate lyase beta like	AF428254|Clybl|69634|citrate lyase beta like
mm9_v1_chr6_-_29559606_29559647	0.079123	NANOG{mouse}.p2	BC064646|Tnpo3|320938|transportin 3	NM_177296|Tnpo3|320938|transportin 3	AK145723|Tnpo3|320938|transportin 3	AK045143|Tnpo3|320938|transportin 3
mm9_v1_chr19_-_46470175_46470258	0.0789924	NANOG{mouse}.p2	BC007131|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK010632|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AB010297|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	NM_016860|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK019518|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK168889|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK088062|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK167450|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK162248|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr9_-_44287814_44287824	0.0784939	NANOG{mouse}.p2	AK034734|Gm10023|100504196|predicted gene 10023
mm9_v1_chr4_+_125724224_125724314	0.078368	NANOG{mouse}.p2	AK140877|Mrps15|66407|mitochondrial ribosomal protein S15	BC029193|Mrps15|66407|mitochondrial ribosomal protein S15	BC055861|Mrps15|66407|mitochondrial ribosomal protein S15	AB049947|Mrps15|66407|mitochondrial ribosomal protein S15
mm9_v1_chr19_+_45122065_45122176	0.0781191	NANOG{mouse}.p2	NM_001178012|Sfxn3|94280|sideroflexin 3	NM_001178013|Sfxn3|94280|sideroflexin 3	NM_053197|Sfxn3|94280|sideroflexin 3	BC012208|Sfxn3|94280|sideroflexin 3
mm9_v1_chr1_+_137029275_137029304	0.0779828	NANOG{mouse}.p2	AK083305|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7	NM_177081|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7
mm9_v1_chr11_-_114862859_114862945	0.0777862	NANOG{mouse}.p2	BC111820|AF251705|140497|cDNA sequence AF251705	AB098476|AF251705|140497|cDNA sequence AF251705	AY457050|AF251705|140497|cDNA sequence AF251705	AB091768|AF251705|140497|cDNA sequence AF251705	AK154808|AF251705|140497|cDNA sequence AF251705	AK050008|AF251705|140497|cDNA sequence AF251705	AK079395|AF251705|140497|cDNA sequence AF251705	AB091767|AF251705|140497|cDNA sequence AF251705	BC006801|AF251705|140497|cDNA sequence AF251705
mm9_v1_chr16_-_91688961_91689032	0.0775706	NANOG{mouse}.p2	BC018792|Donson|60364|downstream neighbor of SON	BC043316|Donson|60364|downstream neighbor of SON	NM_021720|Donson|60364|downstream neighbor of SON	AK132269|Donson|60364|downstream neighbor of SON	AK042415|Donson|60364|downstream neighbor of SON	AK080299|Donson|60364|downstream neighbor of SON
mm9_v1_chr2_-_37558794_37558806	0.0772003	NANOG{mouse}.p2	BC014710|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr9_+_123387818_123387943	0.0769147	NANOG{mouse}.p2	NM_013860|Limd1|29806|LIM domains containing 1	AJ132409|Limd1|29806|LIM domains containing 1	AK047198|Limd1|29806|LIM domains containing 1	BC023371|Limd1|29806|LIM domains containing 1	AK083970|Limd1|29806|LIM domains containing 1	BC056449|Limd1|29806|LIM domains containing 1
mm9_v1_chr9_-_56008770_56008818	0.0764022	NANOG{mouse}.p2	AK159914|Tspan3|56434|tetraspanin 3
mm9_v1_chr10_+_97028456_97028463	0.0762479	NANOG{mouse}.p2	BC005550|Lum|17022|lumican	S79461|Lum|17022|lumican
mm9_v1_chr6_-_87540694_87540714	0.0762256	NANOG{mouse}.p2	BC059003|Prokr1|58182|prokineticin receptor 1	NM_021381|Prokr1|58182|prokineticin receptor 1	AK134279|Prokr1|58182|prokineticin receptor 1
mm9_v1_chr19_-_8893759_8893788	0.0760673	NANOG{mouse}.p2	BC043061|Ttc9c|70387|tetratricopeptide repeat domain 9C	BC058967|Ttc9c|70387|tetratricopeptide repeat domain 9C	AK008753|Ttc9c|70387|tetratricopeptide repeat domain 9C	AK169288|Ttc9c|70387|tetratricopeptide repeat domain 9C	AK169296|Ttc9c|70387|tetratricopeptide repeat domain 9C	NM_027412|Ttc9c|70387|tetratricopeptide repeat domain 9C
mm9_v1_chr15_+_78858872_78858884	0.0753322	NANOG{mouse}.p2	AK051213|H1f0|14958|H1 histone family, member 0	AK090029|H1f0|14958|H1 histone family, member 0	AK146077|H1f0|14958|H1 histone family, member 0	AK153990|H1f0|14958|H1 histone family, member 0
mm9_v1_chr3_+_90052083_90052183	0.0748359	NANOG{mouse}.p2	NM_013901|Slc39a1|30791|solute carrier family 39 (zinc transporter), member 1	AK146175|Slc39a1|30791|solute carrier family 39 (zinc transporter), member 1	BC005474|Slc39a1|30791|solute carrier family 39 (zinc transporter), member 1
mm9_v1_chr2_+_163851185_163851216	0.0747141	NANOG{mouse}.p2	NM_001114079|Pabpc1l|381404|poly(A) binding protein, cytoplasmic 1-like	EU669908|Pabpc1l|381404|poly(A) binding protein, cytoplasmic 1-like
mm9_v1_chr8_+_13060907_13061026	0.0745392	NANOG{mouse}.p2	AK008819|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	NM_025834|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	BC024104|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	BC038045|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	AK005011|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein
mm9_v1_chrX_-_161764912_161765057	0.0742687	NANOG{mouse}.p2	BC056342|Glra2|237213|glycine receptor, alpha 2 subunit	BC068987|Glra2|237213|glycine receptor, alpha 2 subunit	NM_183427|Glra2|237213|glycine receptor, alpha 2 subunit	AK135134|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr13_-_12350266_12350476	0.0734318	NANOG{mouse}.p2	BC145683|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	BC145685|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	NM_001081128|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	AK142258|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	AK037599|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase
mm9_v1_chr7_+_77510266_77510283	0.0732696	NANOG{mouse}.p2	AK045070|B130024G19Rik|434198|RIKEN cDNA B130024G19 gene
mm9_v1_chr11_+_20125239_20125296	0.0729268	NANOG{mouse}.p2	AK078671|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr2_-_152240515_152240566	0.0726812	NANOG{mouse}.p2	AK053859|Zcchc3|67917|zinc finger, CCHC domain containing 3
mm9_v1_chrX_-_137491205_137491263	0.0720541	NANOG{mouse}.p2	AB022022|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	BC026931|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	BC056196|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK009068|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK018233|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK136400|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	NM_001164177|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	NM_016883|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm9_v1_chr6_+_108733075_108733279	0.0713134	NANOG{mouse}.p2	AK152798|Arl8b|67166|ADP-ribosylation factor-like 8B	AK144177|Arl8b|67166|ADP-ribosylation factor-like 8B	AK076292|Arl8b|67166|ADP-ribosylation factor-like 8B	AK146307|Arl8b|67166|ADP-ribosylation factor-like 8B	AK159348|Arl8b|67166|ADP-ribosylation factor-like 8B	AK170645|Arl8b|67166|ADP-ribosylation factor-like 8B	AK012024|Arl8b|67166|ADP-ribosylation factor-like 8B	AK075941|Arl8b|67166|ADP-ribosylation factor-like 8B	AK151036|Arl8b|67166|ADP-ribosylation factor-like 8B	AK149822|Arl8b|67166|ADP-ribosylation factor-like 8B	BC013719|Arl8b|67166|ADP-ribosylation factor-like 8B	AK009279|Arl8b|67166|ADP-ribosylation factor-like 8B	AK169929|Arl8b|67166|ADP-ribosylation factor-like 8B	AK005999|Arl8b|67166|ADP-ribosylation factor-like 8B	AK195129|Arl8b|67166|ADP-ribosylation factor-like 8B	AB185206|Arl8b|67166|ADP-ribosylation factor-like 8B	CT010337|Arl8b|67166|ADP-ribosylation factor-like 8B	AK203754|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr7_-_150646758_150646786	0.0706161	NANOG{mouse}.p2	U20553|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr3_+_89856713_89856975	0.0701656	NANOG{mouse}.p2	NM_025762|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	NM_027500|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK034749|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150324|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150423|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150831|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK151002|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK151263|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK017833|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	BC018438|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK051238|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	BC027190|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK214769|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AY533135|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene
mm9_v1_chr13_+_91062722_91062758	0.0699598	NANOG{mouse}.p2	NM_024175|Rps23|66475|ribosomal protein S23	AK166994|Rps23|66475|ribosomal protein S23	AK010667|Rps23|66475|ribosomal protein S23
mm9_v1_chr11_+_69906223_69906270	0.06993	NANOG{mouse}.p2	X53042|Asgr2|11890|asialoglycoprotein receptor 2
mm9_v1_chr7_+_133630844_133630958	0.0694444	NANOG{mouse}.p2	NM_001163713|Tufm|233870|Tu translation elongation factor, mitochondrial	NM_172745|Tufm|233870|Tu translation elongation factor, mitochondrial	AK152858|Tufm|233870|Tu translation elongation factor, mitochondrial	AK153135|Tufm|233870|Tu translation elongation factor, mitochondrial	BC100596|Tufm|233870|Tu translation elongation factor, mitochondrial	AK084724|Tufm|233870|Tu translation elongation factor, mitochondrial	BC060959|Tufm|233870|Tu translation elongation factor, mitochondrial	AK075857|Tufm|233870|Tu translation elongation factor, mitochondrial
mm9_v1_chr19_-_7457315_7457483	0.0672106	NANOG{mouse}.p2	AK163590|AI846148|68229|expressed sequence AI846148	BC125249|AI846148|68229|expressed sequence AI846148	AK168010|AI846148|68229|expressed sequence AI846148	AK166227|AI846148|68229|expressed sequence AI846148	AK090385|AI846148|68229|expressed sequence AI846148
mm9_v1_chr9_-_48303353_48303470	0.0671752	NANOG{mouse}.p2	BC116931|Rbm7|67010|RNA binding motif protein 7	BC119038|Rbm7|67010|RNA binding motif protein 7	AK008645|Rbm7|67010|RNA binding motif protein 7	AF458961|Rbm7|67010|RNA binding motif protein 7	AK006755|Rbm7|67010|RNA binding motif protein 7	AK145381|Rbm7|67010|RNA binding motif protein 7	AK153504|Rbm7|67010|RNA binding motif protein 7	BC054774|Rbm7|67010|RNA binding motif protein 7	AK164653|Rbm7|67010|RNA binding motif protein 7	AK005200|Rbm7|67010|RNA binding motif protein 7	NM_144948|Rbm7|67010|RNA binding motif protein 7	AK151056|Rbm7|67010|RNA binding motif protein 7	AK011223|Rbm7|67010|RNA binding motif protein 7	AK151827|Rbm7|67010|RNA binding motif protein 7	AK015662|Rbm7|67010|RNA binding motif protein 7
mm9_v1_chr11_+_60230781_60230944	0.0667033	NANOG{mouse}.p2	AK164644|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC052418|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK012042|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC046821|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK142753|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC044901|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr11_-_120685860_120685860	0.0664169	NANOG{mouse}.p2	NM_007988|Fasn|14104|fatty acid synthase
mm9_v1_chr19_-_30623890_30624012	0.0663362	NANOG{mouse}.p2	AF030433|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	BC050189|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	NM_010051|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK141693|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK144119|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)
mm9_v1_chr7_+_146038086_146038160	0.0662261	NANOG{mouse}.p2	AF366393|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr11_-_60230506_60230604	0.065717	NANOG{mouse}.p2	BC013607|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2	AK078500|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2	NM_145427|Atpaf2|246782|ATP synthase mitochondrial F1 complex assembly factor 2
mm9_v1_chr7_-_26506741_26506878	0.0645453	NANOG{mouse}.p2	
mm9_v1_chr7_+_149684731_149684776	0.0641318	NANOG{mouse}.p2	L49466|Tnnt3|21957|troponin T3, skeletal, fast	L49467|Tnnt3|21957|troponin T3, skeletal, fast	L49468|Tnnt3|21957|troponin T3, skeletal, fast	L49469|Tnnt3|21957|troponin T3, skeletal, fast	L49470|Tnnt3|21957|troponin T3, skeletal, fast	L49471|Tnnt3|21957|troponin T3, skeletal, fast	L49472|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163664|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163665|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163666|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163667|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163668|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163669|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163670|Tnnt3|21957|troponin T3, skeletal, fast	NM_011620|Tnnt3|21957|troponin T3, skeletal, fast	U77779|Tnnt3|21957|troponin T3, skeletal, fast	BC003747|Tnnt3|21957|troponin T3, skeletal, fast	AK003147|Tnnt3|21957|troponin T3, skeletal, fast
mm9_v1_chr4_+_155215979_155216047	0.0639422	NANOG{mouse}.p2	AK182996|Mxra8|74761|matrix-remodelling associated 8
mm9_v1_chr10_+_115254308_115254566	0.0639048	NANOG{mouse}.p2	AK087696|Tspan8|216350|tetraspanin 8	AK077301|Tspan8|216350|tetraspanin 8	BC027777|Tspan8|216350|tetraspanin 8	BC029808|Tspan8|216350|tetraspanin 8	NM_001168679|Tspan8|216350|tetraspanin 8	NM_001168680|Tspan8|216350|tetraspanin 8	NM_146010|Tspan8|216350|tetraspanin 8	BC029068|Tspan8|216350|tetraspanin 8	BC025461|Tspan8|216350|tetraspanin 8	BC034198|Tspan8|216350|tetraspanin 8
mm9_v1_chr11_+_98011055_98011069	0.0637653	NANOG{mouse}.p2	
mm9_v1_chr4_-_128925666_128925738	0.0637316	NANOG{mouse}.p2	AK154932|C77080|97130|expressed sequence C77080	NM_001033189|C77080|97130|expressed sequence C77080
mm9_v1_chr2_-_35992076_35992223	0.0635459	NANOG{mouse}.p2	AK008110|Rbm18|67889|RNA binding motif protein 18	AK021243|Rbm18|67889|RNA binding motif protein 18	AK036252|Rbm18|67889|RNA binding motif protein 18	BC005540|Rbm18|67889|RNA binding motif protein 18	AK035348|Rbm18|67889|RNA binding motif protein 18	AK036220|Rbm18|67889|RNA binding motif protein 18	AK135109|Rbm18|67889|RNA binding motif protein 18	NM_001159635|Rbm18|67889|RNA binding motif protein 18	NM_026434|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chr1_+_138362933_138362977	0.0631059	NANOG{mouse}.p2	AK087451|Kif14|381293|kinesin family member 14
mm9_v1_chr7_-_27944870_27944933	0.062887	NANOG{mouse}.p2	AK179611|Egln2|112406|EGL nine homolog 2 (C. elegans)
mm9_v1_chr8_-_47085062_47085225	0.0624838	NANOG{mouse}.p2	AK075868|Ankrd37|654824|ankyrin repeat domain 37	BC039642|Ankrd37|654824|ankyrin repeat domain 37	BC092377|Ankrd37|654824|ankyrin repeat domain 37	NM_001039562|Ankrd37|654824|ankyrin repeat domain 37	AK020869|Ankrd37|654824|ankyrin repeat domain 37
mm9_v1_chr8_+_26707480_26707573	0.0624698	NANOG{mouse}.p2	AK054186|D830025C05Rik|100042416|RIKEN cDNA D830025C05 gene	AK085892|D830025C05Rik|100042416|RIKEN cDNA D830025C05 gene
mm9_v1_chr4_-_129012489_129012496	0.0620419	NANOG{mouse}.p2	AK141176|Rbbp4|19646|retinoblastoma binding protein 4
mm9_v1_chr19_-_56622502_56622559	0.0619569	NANOG{mouse}.p2	NM_018831|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm9_v1_chr13_-_21532756_21532926	0.0615885	NANOG{mouse}.p2	BC089360|Pgbd1|319207|piggyBac transposable element derived 1	BC059882|Pgbd1|319207|piggyBac transposable element derived 1	NM_001012311|Pgbd1|319207|piggyBac transposable element derived 1	NM_001162920|Pgbd1|319207|piggyBac transposable element derived 1	AK076559|Pgbd1|319207|piggyBac transposable element derived 1
mm9_v1_chr18_-_39646734_39646900	0.0614702	NANOG{mouse}.p2	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr12_-_60112987_60113003	0.0612281	NANOG{mouse}.p2	BC034610|Sec23a|20334|SEC23A (S. cerevisiae)	NM_009147|Sec23a|20334|SEC23A (S. cerevisiae)
mm9_v1_chr5_-_144288812_144288864	0.0609331	NANOG{mouse}.p2	BC051053|Rac1|19353|RAS-related C3 botulinum substrate 1	BC003828|Rac1|19353|RAS-related C3 botulinum substrate 1	AK008435|Rac1|19353|RAS-related C3 botulinum substrate 1	AK009017|Rac1|19353|RAS-related C3 botulinum substrate 1	AK011072|Rac1|19353|RAS-related C3 botulinum substrate 1	AK034601|Rac1|19353|RAS-related C3 botulinum substrate 1	AK166383|Rac1|19353|RAS-related C3 botulinum substrate 1	NM_009007|Rac1|19353|RAS-related C3 botulinum substrate 1	AK047969|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr9_-_105372402_105372478	0.0605154	NANOG{mouse}.p2	AK209035|Atp2c1|235574|ATPase, Ca++-sequestering	AK173154|Atp2c1|235574|ATPase, Ca++-sequestering	AJ551270|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr6_-_115803305_115803382	0.0603655	NANOG{mouse}.p2	AK148171|Mbd4|17193|methyl-CpG binding domain protein 4	BC024812|Mbd4|17193|methyl-CpG binding domain protein 4	NM_010774|Mbd4|17193|methyl-CpG binding domain protein 4	AF072249|Mbd4|17193|methyl-CpG binding domain protein 4	AK161005|Mbd4|17193|methyl-CpG binding domain protein 4
mm9_v1_chr11_-_102046532_102046628	0.060088	NANOG{mouse}.p2	AK081685|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK011126|Lsm12|268490|LSM12 homolog (S. cerevisiae)	BC027784|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK132889|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK075668|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK151118|Lsm12|268490|LSM12 homolog (S. cerevisiae)	NM_172947|Lsm12|268490|LSM12 homolog (S. cerevisiae)
mm9_v1_chr2_+_131059825_131059889	0.0597334	NANOG{mouse}.p2	BC020006|Mavs|228607|mitochondrial antiviral signaling protein	AK085038|Mavs|228607|mitochondrial antiviral signaling protein	BC025825|Mavs|228607|mitochondrial antiviral signaling protein	NM_144888|Mavs|228607|mitochondrial antiviral signaling protein	BC031352|Mavs|228607|mitochondrial antiviral signaling protein
mm9_v1_chr11_-_116704485_116704688	0.0590511	NANOG{mouse}.p2	EF527405|Jmjd6|107817|jumonji domain containing 6	BC006067|Jmjd6|107817|jumonji domain containing 6	BC011503|Jmjd6|107817|jumonji domain containing 6	AK122317|Jmjd6|107817|jumonji domain containing 6	AF304118|Jmjd6|107817|jumonji domain containing 6
mm9_v1_chr19_-_6141100_6141219	0.058819	NANOG{mouse}.p2	AF143680|Arl2|56327|ADP-ribosylation factor-like 2	BC052938|Arl2|56327|ADP-ribosylation factor-like 2	BC060259|Arl2|56327|ADP-ribosylation factor-like 2	AK011366|Arl2|56327|ADP-ribosylation factor-like 2	NM_019722|Arl2|56327|ADP-ribosylation factor-like 2	BC080803|Arl2|56327|ADP-ribosylation factor-like 2
mm9_v1_chr8_-_97958656_97958727	0.0584536	NANOG{mouse}.p2	BC092397|Gtl3|14894|gene trap locus 3	BC119023|Gtl3|14894|gene trap locus 3	BC119025|Gtl3|14894|gene trap locus 3	BC144770|Gtl3|14894|gene trap locus 3	AK088713|Gtl3|14894|gene trap locus 3	Z54179|Gtl3|14894|gene trap locus 3	AK011217|Gtl3|14894|gene trap locus 3
mm9_v1_chr11_+_74739357_74739420	0.0584	NANOG{mouse}.p2	BC047279|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC066040|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001002764|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC077715|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC016550|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr12_+_104187054_104187075	0.0582262	NANOG{mouse}.p2	AB257853|Unc79|217843|unc-79 homolog (C. elegans)
mm9_v1_chrX_+_90920450_90920749	0.0578504	NANOG{mouse}.p2	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr18_-_67020125_67020125	0.0577677	NANOG{mouse}.p2	AK136793|Mc4r|17202|melanocortin 4 receptor	NM_016977|Mc4r|17202|melanocortin 4 receptor
mm9_v1_chr11_-_121215559_121215772	0.0572574	NANOG{mouse}.p2	AK182151|Wdr45l|66840|Wdr45 like	AK189483|Wdr45l|66840|Wdr45 like	AK215641|Wdr45l|66840|Wdr45 like	BC004595|Wdr45l|66840|Wdr45 like	AK170602|Wdr45l|66840|Wdr45 like	AK013170|Wdr45l|66840|Wdr45 like	AK086235|Wdr45l|66840|Wdr45 like	AK168603|Wdr45l|66840|Wdr45 like	AK151975|Wdr45l|66840|Wdr45 like	AK002352|Wdr45l|66840|Wdr45 like	AK146101|Wdr45l|66840|Wdr45 like	NM_025793|Wdr45l|66840|Wdr45 like
mm9_v1_chr4_+_125181288_125181474	0.0555963	NANOG{mouse}.p2	NM_008049|Ftl2|14337|ferritin light chain 2	AK145265|Ftl1|14325|ferritin light chain 1	AK213945|Gm15590|100270751|ferritin light chain 1 pseudogene	BC106145|Ftl1|14325|ferritin light chain 1	BC150761|Ftl2|14337|ferritin light chain 2	S89400|Ftl2|14337|ferritin light chain 2
mm9_v1_chr5_-_96590868_96591008	0.0553156	NANOG{mouse}.p2	BC018506|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like	NM_144910|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like
mm9_v1_chr5_-_76374399_76374520	0.0552648	NANOG{mouse}.p2	X59397|Kdr|16542|kinase insert domain protein receptor	BC020530|Kdr|16542|kinase insert domain protein receptor	NM_010612|Kdr|16542|kinase insert domain protein receptor	S53103|Kdr|16542|kinase insert domain protein receptor	AK141938|Kdr|16542|kinase insert domain protein receptor	EU884114|Kdr|16542|kinase insert domain protein receptor	AK054510|Kdr|16542|kinase insert domain protein receptor
mm9_v1_chr18_-_35821788_35821845	0.0541827	NANOG{mouse}.p2	BC060950|Spata24|71242|spermatogenesis associated 24	AK017218|Spata24|71242|spermatogenesis associated 24	AK016341|Spata24|71242|spermatogenesis associated 24	AK012241|Spata24|71242|spermatogenesis associated 24	AY730532|Spata24|71242|spermatogenesis associated 24	NM_027733|Spata24|71242|spermatogenesis associated 24	NM_029485|Spata24|71242|spermatogenesis associated 24
mm9_v1_chr1_-_167167019_167167127	0.0537446	NANOG{mouse}.p2	BC058250|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	BC002098|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK049119|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK075774|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	AK049784|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	NM_145513|Tiprl|226591|TIP41, TOR signalling pathway regulator-like (S. cerevisiae)
mm9_v1_chr2_+_102913831_102913939	0.0535402	NANOG{mouse}.p2	AK077705|Apip|56369|APAF1 interacting protein	NM_019735|Apip|56369|APAF1 interacting protein	AK145450|Apip|56369|APAF1 interacting protein	BC028434|Apip|56369|APAF1 interacting protein	AB028863|Apip|56369|APAF1 interacting protein
mm9_v1_chr17_+_25965977_25966025	0.0534327	NANOG{mouse}.p2	AK155810|Jmjd8|72106|jumonji domain containing 8	NM_028101|Jmjd8|72106|jumonji domain containing 8	AK172073|Jmjd8|72106|jumonji domain containing 8	AK011308|Jmjd8|72106|jumonji domain containing 8	AK148079|Jmjd8|72106|jumonji domain containing 8	BC010800|Jmjd8|72106|jumonji domain containing 8
mm9_v1_chr11_+_34214821_34214821	0.0523583	NANOG{mouse}.p2	BC072605|Fam196b|574403|family with sequence similarity 196, member B	NM_001025382|Fam196b|574403|family with sequence similarity 196, member B
mm9_v1_chr9_+_99476204_99476272	0.0522503	NANOG{mouse}.p2	AK050090|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	NM_031403|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	BC006661|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	AK139631|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	AK090351|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)
mm9_v1_chr16_+_18498963_18499004	0.0522282	NANOG{mouse}.p2	NM_023120|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AK158210|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AK166195|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AK173227|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	BC029862|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	BC024635|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like
mm9_v1_chr15_-_77801154_77801262	0.0521208	NANOG{mouse}.p2	BC089020|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AB012580|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	BC018598|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK049767|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK045228|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK145689|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK158344|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK168256|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	NM_018749|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D
mm9_v1_chrX_-_101176574_101176590	0.0520206	NANOG{mouse}.p2	AF069992|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr11_+_57822347_57822565	0.05161	NANOG{mouse}.p2	NM_028451|Larp1|73158|La ribonucleoprotein domain family, member 1
mm9_v1_chr5_-_121835401_121835617	0.0512889	NANOG{mouse}.p2	AK192786|Trafd1|231712|TRAF type zinc finger domain containing 1	BC038396|Trafd1|231712|TRAF type zinc finger domain containing 1	AK150038|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr9_-_106550298_106550433	0.0512149	NANOG{mouse}.p2	AK034263|Grm2|108068|glutamate receptor, metabotropic 2
mm9_v1_chr4_+_114761312_114761366	0.0505767	NANOG{mouse}.p2	NM_001164557|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_001164558|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_026018|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK007936|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK008253|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK012305|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr13_-_58486515_58486599	0.0504589	NANOG{mouse}.p2	AK052253|2210016F16Rik|70153|RIKEN cDNA 2210016F16 gene	NM_027335|2210016F16Rik|70153|RIKEN cDNA 2210016F16 gene
mm9_v1_chr16_-_10543121_10543218	0.0503873	NANOG{mouse}.p2	BC017551|Dexi|58239|dexamethasone-induced transcript	AK007644|Dexi|58239|dexamethasone-induced transcript	AK032104|Dexi|58239|dexamethasone-induced transcript	NM_021428|Dexi|58239|dexamethasone-induced transcript
mm9_v1_chr16_+_20672854_20672888	0.0502625	NANOG{mouse}.p2	AK053144|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK142399|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK133903|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK139371|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK162698|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066038|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr2_-_177575003_177575048	0.0497535	NANOG{mouse}.p2	BC092392|Gm14325|329575|predicted gene 14325	BC108403|Gm2004|100039000|predicted gene 2004	BC092391|Gm14325|329575|predicted gene 14325
mm9_v1_chr11_+_102465684_102465793	0.0494912	NANOG{mouse}.p2	NM_020510|Fzd2|57265|frizzled homolog 2 (Drosophila)	BC055727|Fzd2|57265|frizzled homolog 2 (Drosophila)	AK048420|Fzd2|57265|frizzled homolog 2 (Drosophila)	AK135363|Fzd2|57265|frizzled homolog 2 (Drosophila)
mm9_v1_chr17_-_47970167_47970209	0.0483478	NANOG{mouse}.p2	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr1_+_174248200_174248249	0.0483091	NANOG{mouse}.p2	AK179661|Igsf8|140559|immunoglobulin superfamily, member 8
mm9_v1_chr6_+_113481672_113481700	0.048119	NANOG{mouse}.p2	NM_001033244|Fancd2|211651|Fanconi anemia, complementation group D2	AK142384|Fancd2|211651|Fanconi anemia, complementation group D2	BC139004|Fancd2|211651|Fanconi anemia, complementation group D2	AK019136|Fancd2|211651|Fanconi anemia, complementation group D2	AK155602|Fancd2|211651|Fanconi anemia, complementation group D2	AK166411|Fancd2|211651|Fanconi anemia, complementation group D2
mm9_v1_chr5_-_111268743_111268795	0.0476715	NANOG{mouse}.p2	BC027641|Hscb|100900|HscB iron-sulfur cluster co-chaperone homolog (E. coli)	AK131961|Hscb|100900|HscB iron-sulfur cluster co-chaperone homolog (E. coli)	NM_153571|Hscb|100900|HscB iron-sulfur cluster co-chaperone homolog (E. coli)
mm9_v1_chr4_-_126427788_126428041	0.0476346	NANOG{mouse}.p2	AK216583|Ncdn|26562|neurochondrin	AK122327|Ncdn|26562|neurochondrin
mm9_v1_chr15_-_63829523_63829656	0.0473672	NANOG{mouse}.p2	BC011343|Fam49b|223601|family with sequence similarity 49, member B
mm9_v1_chr7_+_120657336_120657425	0.0473617	NANOG{mouse}.p2	AK005531|Far1|67420|fatty acyl CoA reductase 1	AK014405|Far1|67420|fatty acyl CoA reductase 1	AK011187|Far1|67420|fatty acyl CoA reductase 1	AK014486|Far1|67420|fatty acyl CoA reductase 1	NM_026143|Far1|67420|fatty acyl CoA reductase 1	NM_027379|Far1|67420|fatty acyl CoA reductase 1	BC007178|Far1|67420|fatty acyl CoA reductase 1	AK033674|Far1|67420|fatty acyl CoA reductase 1	AK030067|Far1|67420|fatty acyl CoA reductase 1
mm9_v1_chr2_-_177183009_177183079	0.0472647	NANOG{mouse}.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr9_-_115219520_115219538	0.0469517	NANOG{mouse}.p2	BC052433|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	NM_024222|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr2_+_72817468_72817530	0.046951	NANOG{mouse}.p2	AK005870|1700011J10Rik|67686|RIKEN cDNA 1700011J10 gene	AK013593|1700011J10Rik|67686|RIKEN cDNA 1700011J10 gene
mm9_v1_chr4_+_151653120_151653375	0.0467531	NANOG{mouse}.p2	BC037650|Gpr153|100129|G protein-coupled receptor 153	BC029098|Gpr153|100129|G protein-coupled receptor 153	AY255610|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr7_+_63049505_63049618	0.0466941	NANOG{mouse}.p2	NM_146190|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK051326|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK044887|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK160939|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK032031|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK086158|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK152033|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK153331|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK161681|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK151454|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK153357|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK044444|Tubgcp5|233276|tubulin, gamma complex associated protein 5
mm9_v1_chr7_-_4704436_4704695	0.0466797	NANOG{mouse}.p2	CT010366|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC048670|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183406|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AK160152|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125562|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125564|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC145201|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107296|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107297|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AY152400|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183405|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2
mm9_v1_chrX_+_138662479_138662479	0.0466273	NANOG{mouse}.p2	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr6_+_29803751_29803890	0.0466126	NANOG{mouse}.p2	AK172595|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr18_+_75165496_75165648	0.0465667	NANOG{mouse}.p2	AK077642|BC031181|407819|cDNA sequence BC031181	BC016084|BC031181|407819|cDNA sequence BC031181	NM_001001181|BC031181|407819|cDNA sequence BC031181	AK131658|BC031181|407819|cDNA sequence BC031181	BC031181|BC031181|407819|cDNA sequence BC031181	BC027819|BC031181|407819|cDNA sequence BC031181	AK180483|BC031181|407819|cDNA sequence BC031181	AK187367|BC031181|407819|cDNA sequence BC031181
mm9_v1_chr3_-_36374572_36374652	0.0461298	NANOG{mouse}.p2	AK153476|Anxa5|11747|annexin A5	BC003716|Anxa5|11747|annexin A5	AK147740|Anxa5|11747|annexin A5	AK153388|Anxa5|11747|annexin A5	AK152185|Anxa5|11747|annexin A5
mm9_v1_chr1_+_174246288_174246437	0.0458796	NANOG{mouse}.p2	BC026464|Igsf8|140559|immunoglobulin superfamily, member 8	AK183814|Igsf8|140559|immunoglobulin superfamily, member 8
mm9_v1_chr3_-_88262982_88263022	0.0455189	NANOG{mouse}.p2	NM_001163490|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr7_-_31065400_31065455	0.0453949	NANOG{mouse}.p2	AK154592|Wdr62|233064|WD repeat domain 62	BC054747|Wdr62|233064|WD repeat domain 62	NM_146186|Wdr62|233064|WD repeat domain 62
mm9_v1_chr17_+_43938789_43938843	0.0451859	NANOG{mouse}.p2	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr5_+_90890764_90890776	0.045126	NANOG{mouse}.p2	AK050644|Alb|11657|albumin
mm9_v1_chr12_-_103151331_103151476	0.0451062	NANOG{mouse}.p2	AK077954|Trip11|109181|thyroid hormone receptor interactor 11	AK081763|Trip11|109181|thyroid hormone receptor interactor 11	AK014103|Trip11|109181|thyroid hormone receptor interactor 11	AK148294|Trip11|109181|thyroid hormone receptor interactor 11	AK012112|Trip11|109181|thyroid hormone receptor interactor 11	NM_028446|Trip11|109181|thyroid hormone receptor interactor 11	BC158098|Trip11|109181|thyroid hormone receptor interactor 11
mm9_v1_chr9_-_105397342_105397452	0.0447781	NANOG{mouse}.p2	AK032255|Atp2c1|235574|ATPase, Ca++-sequestering	AK028393|Atp2c1|235574|ATPase, Ca++-sequestering	BC043706|Atp2c1|235574|ATPase, Ca++-sequestering	AK159918|Atp2c1|235574|ATPase, Ca++-sequestering	AK163049|Atp2c1|235574|ATPase, Ca++-sequestering	BC043091|Atp2c1|235574|ATPase, Ca++-sequestering	AK052958|Atp2c1|235574|ATPase, Ca++-sequestering	NM_175025|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr9_-_90009416_90009657	0.0447028	NANOG{mouse}.p2	AK167079|Morf4l1|21761|mortality factor 4 like 1	AK164251|Morf4l1|21761|mortality factor 4 like 1	AK010528|Morf4l1|21761|mortality factor 4 like 1	AK011441|Morf4l1|21761|mortality factor 4 like 1	AK182816|Morf4l1|21761|mortality factor 4 like 1	AK218718|Morf4l1|21761|mortality factor 4 like 1	BC083094|Morf4l1|21761|mortality factor 4 like 1	AK152119|Morf4l1|21761|mortality factor 4 like 1	AK168585|Morf4l1|21761|mortality factor 4 like 1	AK168608|Morf4l1|21761|mortality factor 4 like 1	AK150925|Morf4l1|21761|mortality factor 4 like 1	AK220441|Morf4l1|21761|mortality factor 4 like 1	AK146210|Morf4l1|21761|mortality factor 4 like 1	AK168327|Morf4l1|21761|mortality factor 4 like 1	AK169065|Morf4l1|21761|mortality factor 4 like 1	AK168674|Morf4l1|21761|mortality factor 4 like 1	AB042241|Morf4l1|21761|mortality factor 4 like 1	AF319620|Morf4l1|21761|mortality factor 4 like 1	AF319621|Morf4l1|21761|mortality factor 4 like 1	BC085103|Morf4l1|21761|mortality factor 4 like 1	BC003894|Morf4l1|21761|mortality factor 4 like 1	BC017619|Morf4l1|21761|mortality factor 4 like 1	BC083118|Morf4l1|21761|mortality factor 4 like 1	BC092293|Morf4l1|21761|mortality factor 4 like 1	BC103783|Morf4l1|21761|mortality factor 4 like 1	AK011249|Morf4l1|21761|mortality factor 4 like 1	AK016414|Morf4l1|21761|mortality factor 4 like 1	NM_001039147|Morf4l1|21761|mortality factor 4 like 1	NM_024431|Morf4l1|21761|mortality factor 4 like 1
mm9_v1_chr6_-_149049906_149050060	0.0437667	NANOG{mouse}.p2	BC132199|Dennd5b|320560|DENN/MADD domain containing 5B	BC132535|Dennd5b|320560|DENN/MADD domain containing 5B	BC145128|Dennd5b|320560|DENN/MADD domain containing 5B	AK052296|Dennd5b|320560|DENN/MADD domain containing 5B	AK050728|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr1_+_40082070_40082114	0.0436254	NANOG{mouse}.p2	AK159799|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr3_+_89050340_89050434	0.0430785	NANOG{mouse}.p2	AK002479|Krtcap2|66059|keratinocyte associated protein 2	NM_025327|Krtcap2|66059|keratinocyte associated protein 2	AK003310|Krtcap2|66059|keratinocyte associated protein 2	BC031492|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr2_-_155899631_155899762	0.0430647	NANOG{mouse}.p2	AK075784|Cpne1|266692|copine I
mm9_v1_chr19_-_47611583_47611612	0.0428983	NANOG{mouse}.p2	AK166348|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK146929|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1
mm9_v1_chr14_-_124591742_124591767	0.0428244	NANOG{mouse}.p2	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr19_-_41674337_41674343	0.0427692	NANOG{mouse}.p2	
mm9_v1_chr17_-_71948080_71948114	0.042599	NANOG{mouse}.p2	AK032413|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)	AK036113|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)
mm9_v1_chr13_-_54789548_54789560	0.0424505	NANOG{mouse}.p2	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr2_-_44972914_44972969	0.042436	NANOG{mouse}.p2	AJ535778|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr4_-_126645421_126645456	0.0423197	NANOG{mouse}.p2	AK129137|Zmym4|67785|zinc finger, MYM-type 4
mm9_v1_chr6_-_30341017_30341032	0.0421619	NANOG{mouse}.p2	AK168071|Zc3hc1|232679|zinc finger, C3HC type 1	AK146228|Zc3hc1|232679|zinc finger, C3HC type 1	AK167992|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr17_+_34726750_34726889	0.0418518	NANOG{mouse}.p2	AK155617|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	NM_134116|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	AK146245|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC085186|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	AK144833|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC080804|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)
mm9_v1_chr10_+_81590757_81590757	0.0416213	NANOG{mouse}.p2	AK137251|AU041133|216177|expressed sequence AU041133	NM_001163064|AU041133|216177|expressed sequence AU041133
mm9_v1_chr8_+_119028873_119028914	0.0410753	NANOG{mouse}.p2	BC048623|Dynlrb2|75465|dynein light chain roadblock-type 2	AK005789|Dynlrb2|75465|dynein light chain roadblock-type 2	NM_029297|Dynlrb2|75465|dynein light chain roadblock-type 2
mm9_v1_chr9_-_56008828_56008912	0.0409625	NANOG{mouse}.p2	AK159621|Tspan3|56434|tetraspanin 3	AK159324|Tspan3|56434|tetraspanin 3	AK169068|Tspan3|56434|tetraspanin 3	BC043072|Tspan3|56434|tetraspanin 3	AK146130|Tspan3|56434|tetraspanin 3	AK168231|Tspan3|56434|tetraspanin 3	NM_019793|Tspan3|56434|tetraspanin 3
mm9_v1_chr2_-_180436533_180436806	0.0400019	NANOG{mouse}.p2	BC029110|Dido1|23856|death inducer-obliterator 1	AJ238332|Dido1|23856|death inducer-obliterator 1	AY425951|Dido1|23856|death inducer-obliterator 1	AY425952|Dido1|23856|death inducer-obliterator 1	AK044919|Dido1|23856|death inducer-obliterator 1	AK083334|Dido1|23856|death inducer-obliterator 1	AK042474|Dido1|23856|death inducer-obliterator 1	NM_011805|Dido1|23856|death inducer-obliterator 1	NM_175551|Dido1|23856|death inducer-obliterator 1	AK014422|Dido1|23856|death inducer-obliterator 1
mm9_v1_chrX_+_63906333_63906333	0.0397588	NANOG{mouse}.p2	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr8_-_87549120_87549191	0.0396536	NANOG{mouse}.p2	BC016453|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	BC083335|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AF039405|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	NM_019652|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK007827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK171690|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr2_-_26766098_26766111	0.0394656	NANOG{mouse}.p2	AK161053|Med22|20933|mediator complex subunit 22	AK166250|Med22|20933|mediator complex subunit 22
mm9_v1_chr11_-_4646742_4646780	0.039079	NANOG{mouse}.p2	BC104356|Cabp7|192650|calcium binding protein 7	BC104357|Cabp7|192650|calcium binding protein 7	AF419324|Cabp7|192650|calcium binding protein 7	NM_138948|Cabp7|192650|calcium binding protein 7
mm9_v1_chr15_-_98728930_98728984	0.0389951	NANOG{mouse}.p2	BC062810|Dhh|13363|desert hedgehog	AK032466|Dhh|13363|desert hedgehog	AK033392|Dhh|13363|desert hedgehog	NM_007857|Dhh|13363|desert hedgehog
mm9_v1_chr1_+_74552794_74553011	0.0389057	NANOG{mouse}.p2	BC051948|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)	BC050898|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)	AF221849|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm9_v1_chr18_-_39572137_39572180	0.0388135	NANOG{mouse}.p2	AK171439|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	AK163857|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr18_-_14841254_14841287	0.0387474	NANOG{mouse}.p2	BC065062|Ss18|268996|synovial sarcoma translocation, Chromosome 18	BC096742|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK039430|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK051601|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK052476|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK166053|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK083622|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK149325|Ss18|268996|synovial sarcoma translocation, Chromosome 18
mm9_v1_chr7_-_109835767_109835842	0.0382062	NANOG{mouse}.p2	BC034249|Trim68|101700|tripartite motif-containing 68	AK164544|Trim68|101700|tripartite motif-containing 68	AK089546|Trim68|101700|tripartite motif-containing 68	AK155267|Trim68|101700|tripartite motif-containing 68	NM_198012|Trim68|101700|tripartite motif-containing 68
mm9_v1_chr6_-_6167086_6167104	0.037664	NANOG{mouse}.p2	AK029020|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr16_-_5049936_5049986	0.0367068	NANOG{mouse}.p2	BC006893|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK014456|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK150349|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK152887|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK151832|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK152586|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK140812|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK141815|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK040841|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK145277|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK031636|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	AK159476|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)
mm9_v1_chr15_-_76039510_76039594	0.0367005	NANOG{mouse}.p2	AK017743|Plec|18810|plectin	AF188017|Plec|18810|plectin	AF188018|Plec|18810|plectin	AY480035|Plec|18810|plectin	NM_201386|Plec|18810|plectin
mm9_v1_chr1_-_193007202_193007214	0.0365687	NANOG{mouse}.p2	BC019946|Atf3|11910|activating transcription factor 3	NM_007498|Atf3|11910|activating transcription factor 3	AK133965|Atf3|11910|activating transcription factor 3
mm9_v1_chr12_+_30219982_30220081	0.0364844	NANOG{mouse}.p2	AK049624|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr1_-_136131963_136131973	0.0363031	NANOG{mouse}.p2	AK043954|Adora1|11539|adenosine A1 receptor
mm9_v1_chr15_-_82074765_82074852	0.0362695	NANOG{mouse}.p2	NM_001080158|Cenpm|66570|centromere protein M
mm9_v1_chr5_-_144288771_144288810	0.0360394	NANOG{mouse}.p2	X57277|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr17_+_73185961_73186089	0.0351973	NANOG{mouse}.p2	AK167998|Ypel5|383295|yippee-like 5 (Drosophila)	AK165943|Ypel5|383295|yippee-like 5 (Drosophila)	AK169241|Ypel5|383295|yippee-like 5 (Drosophila)	AK049096|Ypel5|383295|yippee-like 5 (Drosophila)	AK171010|Ypel5|383295|yippee-like 5 (Drosophila)	NM_027166|Ypel5|383295|yippee-like 5 (Drosophila)	AK046281|Ypel5|383295|yippee-like 5 (Drosophila)	AK049644|Ypel5|383295|yippee-like 5 (Drosophila)	AK169986|Ypel5|383295|yippee-like 5 (Drosophila)	AK137446|Ypel5|383295|yippee-like 5 (Drosophila)	AK010201|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr2_-_151805846_151805913	0.0350783	NANOG{mouse}.p2	AK017381|Fam110a|73847|family with sequence similarity 110, member A	BC034240|Fam110a|73847|family with sequence similarity 110, member A	AK154171|Fam110a|73847|family with sequence similarity 110, member A	BC094463|Fam110a|73847|family with sequence similarity 110, member A	AK050928|Fam110a|73847|family with sequence similarity 110, member A	AK080248|Fam110a|73847|family with sequence similarity 110, member A
mm9_v1_chr10_-_90634236_90634341	0.0349025	NANOG{mouse}.p2	U39073|Tmpo|21917|thymopoietin	U39078|Tmpo|21917|thymopoietin	U39074|Tmpo|21917|thymopoietin	U39075|Tmpo|21917|thymopoietin	U39076|Tmpo|21917|thymopoietin	U39077|Tmpo|21917|thymopoietin	AK150515|Tmpo|21917|thymopoietin	AK153281|Tmpo|21917|thymopoietin	AK150305|Tmpo|21917|thymopoietin	AK141845|Tmpo|21917|thymopoietin	AK156206|Tmpo|21917|thymopoietin	AK165282|Tmpo|21917|thymopoietin	AK151936|Tmpo|21917|thymopoietin	AK152737|Tmpo|21917|thymopoietin	AK165851|Tmpo|21917|thymopoietin	AK144642|Tmpo|21917|thymopoietin	AK146903|Tmpo|21917|thymopoietin	NM_001080129|Tmpo|21917|thymopoietin	NM_001080130|Tmpo|21917|thymopoietin	NM_001080131|Tmpo|21917|thymopoietin	NM_001080132|Tmpo|21917|thymopoietin	NM_001080134|Tmpo|21917|thymopoietin	NM_011605|Tmpo|21917|thymopoietin
mm9_v1_chr2_-_104334276_104334479	0.0345264	NANOG{mouse}.p2	BC131663|Hipk3|15259|homeodomain interacting protein kinase 3	BC131664|Hipk3|15259|homeodomain interacting protein kinase 3	AF077660|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr3_-_88262805_88262805	0.0343765	NANOG{mouse}.p2	NM_001163491|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr17_+_46787285_46787649	0.034369	NANOG{mouse}.p2	AK155583|Cul7|66515|cullin 7	AK170580|Cul7|66515|cullin 7	NM_025611|Cul7|66515|cullin 7	AK082134|Cul7|66515|cullin 7	BC138998|Cul7|66515|cullin 7	BC139000|Cul7|66515|cullin 7	AK166135|Cul7|66515|cullin 7	AK170808|Cul7|66515|cullin 7	AK155454|Cul7|66515|cullin 7	AK144856|Cul7|66515|cullin 7	AK147156|Cul7|66515|cullin 7	AK147905|Cul7|66515|cullin 7
mm9_v1_chr2_+_29989278_29989390	0.0342957	NANOG{mouse}.p2	AK158066|Tbc1d13|70296|TBC1 domain family, member 13	AK188413|Tbc1d13|70296|TBC1 domain family, member 13	BC025586|Tbc1d13|70296|TBC1 domain family, member 13	NM_146252|Tbc1d13|70296|TBC1 domain family, member 13
mm9_v1_chr6_+_124780193_124780220	0.0341554	NANOG{mouse}.p2	NM_013538|Cdca3|14793|cell division cycle associated 3	AK011313|Cdca3|14793|cell division cycle associated 3
mm9_v1_chr17_+_35263978_35264059	0.0341298	NANOG{mouse}.p2	BC138707|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E	BC138708|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E	NM_033477|D17H6S53E|114585|DNA segment, Chr 17, human D6S53E
mm9_v1_chr6_+_145882641_145882808	0.0340196	NANOG{mouse}.p2	AK162864|Sspn|16651|sarcospan	AK163041|Sspn|16651|sarcospan	AK164430|Sspn|16651|sarcospan	BC021484|Sspn|16651|sarcospan	NM_010656|Sspn|16651|sarcospan	U02487|Sspn|16651|sarcospan	AK148179|Sspn|16651|sarcospan	AK164529|Sspn|16651|sarcospan
mm9_v1_chr19_+_56622750_56622913	0.0339207	NANOG{mouse}.p2	AK033384|Nhlrc2|66866|NHL repeat containing 2	NM_025811|Nhlrc2|66866|NHL repeat containing 2	BC095956|Nhlrc2|66866|NHL repeat containing 2	BC138190|Nhlrc2|66866|NHL repeat containing 2	BC138191|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr7_-_87485030_87485120	0.0339061	NANOG{mouse}.p2	AK047292|Unc45a|101869|unc-45 homolog A (C. elegans)	AK047476|Unc45a|101869|unc-45 homolog A (C. elegans)	AK088034|Unc45a|101869|unc-45 homolog A (C. elegans)	AK087777|Unc45a|101869|unc-45 homolog A (C. elegans)	AK166809|Unc45a|101869|unc-45 homolog A (C. elegans)	AK028912|Unc45a|101869|unc-45 homolog A (C. elegans)	BC004717|Unc45a|101869|unc-45 homolog A (C. elegans)	NM_133952|Unc45a|101869|unc-45 homolog A (C. elegans)
mm9_v1_chr6_+_43215604_43215702	0.0337371	NANOG{mouse}.p2	NM_133674|Arhgef5|54324|Rho guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr17_-_46782935_46782980	0.0336228	NANOG{mouse}.p2	BC005746|Klc4|74764|kinesin light chain 4	AK170793|Klc4|74764|kinesin light chain 4
mm9_v1_chr12_+_117643874_117643931	0.0335872	NANOG{mouse}.p2	AK138871|Ncapg2|76044|non-SMC condensin II complex, subunit G2	NM_133762|Ncapg2|76044|non-SMC condensin II complex, subunit G2
mm9_v1_chr5_+_136108487_136108731	0.0333263	NANOG{mouse}.p2	AK140006|Rhbdd2|215160|rhomboid domain containing 2	AK141182|Rhbdd2|215160|rhomboid domain containing 2	NM_146002|Rhbdd2|215160|rhomboid domain containing 2	AK165926|Rhbdd2|215160|rhomboid domain containing 2	AK041845|Rhbdd2|215160|rhomboid domain containing 2	AK030434|Rhbdd2|215160|rhomboid domain containing 2	AK043674|Rhbdd2|215160|rhomboid domain containing 2	BC018360|Rhbdd2|215160|rhomboid domain containing 2	BC028957|Rhbdd2|215160|rhomboid domain containing 2	AK189822|Rhbdd2|215160|rhomboid domain containing 2	AK212798|Rhbdd2|215160|rhomboid domain containing 2
mm9_v1_chr11_-_83100174_83100227	0.0330788	NANOG{mouse}.p2	NM_001166028|Slfn14-ps|237890|schlafen family member 14, pseudogene
mm9_v1_chr5_+_122804377_122804463	0.0324088	NANOG{mouse}.p2	AK150330|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	AK008248|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	AK004103|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	AF193794|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	NM_019780|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	BC005663|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	AK036426|Vps29|56433|vacuolar protein sorting 29 (S. pombe)
mm9_v1_chr18_-_6135924_6136095	0.0320292	NANOG{mouse}.p2	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr10_+_110943644_110943680	0.0318371	NANOG{mouse}.p2	
mm9_v1_chr5_-_44485951_44486006	0.03173	NANOG{mouse}.p2	AF305215|Prom1|19126|prominin 1	AY099088|Prom1|19126|prominin 1	AY223521|Prom1|19126|prominin 1	AY223522|Prom1|19126|prominin 1	NM_001163578|Prom1|19126|prominin 1	NM_001163581|Prom1|19126|prominin 1	NM_001163582|Prom1|19126|prominin 1	NM_001163583|Prom1|19126|prominin 1	NM_001163584|Prom1|19126|prominin 1	NM_001163585|Prom1|19126|prominin 1
mm9_v1_chr2_+_35111861_35111977	0.0316121	NANOG{mouse}.p2	AK148957|Gsn|227753|gelsolin	AK089934|Gsn|227753|gelsolin	AK168707|Gsn|227753|gelsolin	BC060377|Gsn|227753|gelsolin	AK151684|Gsn|227753|gelsolin	AK169670|Gsn|227753|gelsolin	AK168532|Gsn|227753|gelsolin	AK168461|Gsn|227753|gelsolin	AK167918|Gsn|227753|gelsolin	AK150359|Gsn|227753|gelsolin	AK153029|Gsn|227753|gelsolin	AK146969|Gsn|227753|gelsolin	AK168725|Gsn|227753|gelsolin	AK169041|Gsn|227753|gelsolin	AK166932|Gsn|227753|gelsolin
mm9_v1_chr7_+_27814096_27814122	0.0313737	NANOG{mouse}.p2	BC018356|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	NM_133657|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	BC094017|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	L06463|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12
mm9_v1_chr5_+_91201538_91201542	0.0313484	NANOG{mouse}.p2	AB017491|Pf4|56744|platelet factor 4
mm9_v1_chr6_-_87540727_87540744	0.031282	NANOG{mouse}.p2	AK156734|Prokr1|58182|prokineticin receptor 1
mm9_v1_chr3_-_86724093_86724302	0.0304993	NANOG{mouse}.p2	AY968049|Dclk2|70762|doublecortin-like kinase 2	AY968050|Dclk2|70762|doublecortin-like kinase 2	AY968051|Dclk2|70762|doublecortin-like kinase 2	BC060192|Dclk2|70762|doublecortin-like kinase 2	AB198721|Dclk2|70762|doublecortin-like kinase 2	AK049179|Dclk2|70762|doublecortin-like kinase 2	AK049126|Dclk2|70762|doublecortin-like kinase 2	AK082633|Dclk2|70762|doublecortin-like kinase 2
mm9_v1_chr9_-_109986879_109987026	0.0301708	NANOG{mouse}.p2	AK193613|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr10_-_80129835_80129910	0.0294001	NANOG{mouse}.p2	AK194807|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr5_-_96590773_96590783	0.0292826	NANOG{mouse}.p2	AK030112|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like	NM_178854|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like
mm9_v1_chr2_+_103406466_103406480	0.0291294	NANOG{mouse}.p2	BC054399|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	NM_178890|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK041486|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK170569|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK172468|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK042322|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK151620|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK152163|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK172414|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2
mm9_v1_chr8_-_83538732_83538837	0.0290386	NANOG{mouse}.p2	BC058784|Usp38|74841|ubiquitin specific peptidase 38	BC066786|Usp38|74841|ubiquitin specific peptidase 38	AK129464|Usp38|74841|ubiquitin specific peptidase 38	AK049287|Usp38|74841|ubiquitin specific peptidase 38	AK028904|Usp38|74841|ubiquitin specific peptidase 38	BC057122|Usp38|74841|ubiquitin specific peptidase 38	AK142200|Usp38|74841|ubiquitin specific peptidase 38	BC054404|Usp38|74841|ubiquitin specific peptidase 38	NM_027554|Usp38|74841|ubiquitin specific peptidase 38	AK054116|Usp38|74841|ubiquitin specific peptidase 38	AK139639|Usp38|74841|ubiquitin specific peptidase 38	AK052219|Usp38|74841|ubiquitin specific peptidase 38
mm9_v1_chr7_-_26504053_26504077	0.0289362	NANOG{mouse}.p2	AK155466|Ccdc97|52132|coiled-coil domain containing 97	AK045509|Ccdc97|52132|coiled-coil domain containing 97	AK088221|Ccdc97|52132|coiled-coil domain containing 97	AK004762|Ccdc97|52132|coiled-coil domain containing 97	NM_028771|Ccdc97|52132|coiled-coil domain containing 97
mm9_v1_chr6_-_54543121_54543160	0.0286982	NANOG{mouse}.p2	BC029109|Fkbp14|231997|FK506 binding protein 14	NM_153573|Fkbp14|231997|FK506 binding protein 14	BC034313|Fkbp14|231997|FK506 binding protein 14	AK081692|Fkbp14|231997|FK506 binding protein 14	AK044876|Fkbp14|231997|FK506 binding protein 14
mm9_v1_chr11_-_102178006_102178018	0.0286398	NANOG{mouse}.p2	BC024622|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr9_-_21314605_21314677	0.0283859	NANOG{mouse}.p2	U41805|Tmed1|17083|transmembrane emp24 domain containing 1	BC006715|Tmed1|17083|transmembrane emp24 domain containing 1	AK133513|Tmed1|17083|transmembrane emp24 domain containing 1	AK166092|Tmed1|17083|transmembrane emp24 domain containing 1	NM_010744|Tmed1|17083|transmembrane emp24 domain containing 1	AK160525|Tmed1|17083|transmembrane emp24 domain containing 1	BC016568|Tmed1|17083|transmembrane emp24 domain containing 1	BC138499|Tmed1|17083|transmembrane emp24 domain containing 1	BC138498|Tmed1|17083|transmembrane emp24 domain containing 1	BC145298|Tmed1|17083|transmembrane emp24 domain containing 1
mm9_v1_chr10_+_18246228_18246361	0.0279419	NANOG{mouse}.p2	AK220386|Nhsl1|215819|NHS-like 1	AK134837|Nhsl1|215819|NHS-like 1	AK043447|Nhsl1|215819|NHS-like 1
mm9_v1_chr2_-_28555168_28555202	0.0272033	NANOG{mouse}.p2	AK161340|1700026L06Rik|69987|RIKEN cDNA 1700026L06 gene	AK155408|1700026L06Rik|69987|RIKEN cDNA 1700026L06 gene	BC055108|1700026L06Rik|69987|RIKEN cDNA 1700026L06 gene	NM_027283|1700026L06Rik|69987|RIKEN cDNA 1700026L06 gene	AK155297|1700026L06Rik|69987|RIKEN cDNA 1700026L06 gene
mm9_v1_chr9_-_103965405_103965479	0.0270559	NANOG{mouse}.p2	AK151823|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK077825|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK168907|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK152029|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK017787|Uba5|66663|ubiquitin-like modifier activating enzyme 5	NM_025692|Uba5|66663|ubiquitin-like modifier activating enzyme 5
mm9_v1_chr4_+_125724139_125724216	0.0270108	NANOG{mouse}.p2	AK050396|Mrps15|66407|mitochondrial ribosomal protein S15	NM_025544|Mrps15|66407|mitochondrial ribosomal protein S15	AK010330|Mrps15|66407|mitochondrial ribosomal protein S15
mm9_v1_chr5_-_114541313_114541402	0.0269577	NANOG{mouse}.p2	BC059878|Svop|68666|SV2 related protein	AK047655|Svop|68666|SV2 related protein	AK053833|Svop|68666|SV2 related protein	AK160770|Svop|68666|SV2 related protein	AK047764|Svop|68666|SV2 related protein	AK082744|Svop|68666|SV2 related protein	NM_026805|Svop|68666|SV2 related protein
mm9_v1_chr7_+_13466525_13466568	0.0268829	NANOG{mouse}.p2	AK132244|Zfp128|243833|zinc finger protein 128	AK035906|Zfp128|243833|zinc finger protein 128	NM_153802|Zfp128|243833|zinc finger protein 128	AK032046|Zfp128|243833|zinc finger protein 128	BC088998|Zfp128|243833|zinc finger protein 128	BC094248|Zfp128|243833|zinc finger protein 128	AF480861|Zfp128|243833|zinc finger protein 128
mm9_v1_chr6_+_125046576_125046586	0.0261819	NANOG{mouse}.p2	AK020564|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr9_-_85637765_85637765	0.0260957	NANOG{mouse}.p2	NM_001081282|Ibtk|108837|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm9_v1_chr12_+_77471506_77471590	0.0258066	NANOG{mouse}.p2	AK029762|Zbtb1|268564|zinc finger and BTB domain containing 1	AK131985|Zbtb1|268564|zinc finger and BTB domain containing 1	BC012239|Zbtb1|268564|zinc finger and BTB domain containing 1
mm9_v1_chr2_-_26766133_26766139	0.0256543	NANOG{mouse}.p2	AK166474|Med22|20933|mediator complex subunit 22	AK144744|Med22|20933|mediator complex subunit 22
mm9_v1_chr3_+_63100128_63100144	0.0255196	NANOG{mouse}.p2	AK040730|Mme|17380|membrane metallo endopeptidase	AK080202|Mme|17380|membrane metallo endopeptidase	BC034092|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr16_-_56029770_56029852	0.0254814	NANOG{mouse}.p2	AK150595|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK145195|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK152279|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC106192|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC061235|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK159201|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC023320|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK168723|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK166071|Pcnp|76302|PEST proteolytic signal containing nuclear protein	NM_001024622|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC132588|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC132590|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC145194|Pcnp|76302|PEST proteolytic signal containing nuclear protein
mm9_v1_chr1_-_52557130_52557348	0.0251936	NANOG{mouse}.p2	U47008|Nab1|17936|Ngfi-A binding protein 1	BC016886|Nab1|17936|Ngfi-A binding protein 1	BC005627|Nab1|17936|Ngfi-A binding protein 1	NM_008667|Nab1|17936|Ngfi-A binding protein 1
mm9_v1_chrY_-_582062_582201	0.0251909	NANOG{mouse}.p2	AK162410|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK220463|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK155922|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AF057367|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	BC053061|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK043154|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	NM_009484|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142344|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142512|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm9_v1_chr5_+_20388263_20388316	0.0249798	NANOG{mouse}.p2	NM_177601|Tmem60|212090|transmembrane protein 60	AK041036|Tmem60|212090|transmembrane protein 60
mm9_v1_chr10_-_79538107_79538150	0.0248816	NANOG{mouse}.p2	AK156157|Sbno2|216161|strawberry notch homolog 2 (Drosophila)
mm9_v1_chr7_+_137789817_137789916	0.0247284	NANOG{mouse}.p2	AK198910|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr1_-_167124442_167124588	0.0236666	NANOG{mouse}.p2	BC017549|Sft2d2|108735|SFT2 domain containing 2	AK036578|Sft2d2|108735|SFT2 domain containing 2	AK170590|Sft2d2|108735|SFT2 domain containing 2	AK156973|Sft2d2|108735|SFT2 domain containing 2	AK075812|Sft2d2|108735|SFT2 domain containing 2	NM_145512|Sft2d2|108735|SFT2 domain containing 2
mm9_v1_chr19_-_7066983_7067014	0.0234993	NANOG{mouse}.p2	BC049281|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4	AK170008|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4	AK008507|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4
mm9_v1_chr7_-_4966232_4966265	0.023055	NANOG{mouse}.p2	AF126746|Fiz1|23877|Flt3 interacting zinc finger protein 1	BC106113|Fiz1|23877|Flt3 interacting zinc finger protein 1	AK162454|Fiz1|23877|Flt3 interacting zinc finger protein 1	AK170633|Fiz1|23877|Flt3 interacting zinc finger protein 1	AK139120|Fiz1|23877|Flt3 interacting zinc finger protein 1	AK220212|Fiz1|23877|Flt3 interacting zinc finger protein 1
mm9_v1_chr17_+_22099525_22099724	0.0230286	NANOG{mouse}.p2	AK036434|Zfp943|74670|zinc finger prtoein 943	NM_001025373|Zfp943|74670|zinc finger prtoein 943	AK015297|Zfp943|74670|zinc finger prtoein 943	BC038865|Zfp943|74670|zinc finger prtoein 943	BC066031|Zfp943|74670|zinc finger prtoein 943
mm9_v1_chr6_-_149050201_149050210	0.022658	NANOG{mouse}.p2	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr3_+_116265890_116265995	0.0221581	NANOG{mouse}.p2	AK035072|Lrrc39|109245|leucine rich repeat containing 39	NM_027321|Lrrc39|109245|leucine rich repeat containing 39	NM_175413|Lrrc39|109245|leucine rich repeat containing 39	AK039277|Lrrc39|109245|leucine rich repeat containing 39	AK079125|Lrrc39|109245|leucine rich repeat containing 39	AK008119|Lrrc39|109245|leucine rich repeat containing 39	AK052159|Lrrc39|109245|leucine rich repeat containing 39	BC119529|Lrrc39|109245|leucine rich repeat containing 39	BC119530|Lrrc39|109245|leucine rich repeat containing 39	AK046671|Lrrc39|109245|leucine rich repeat containing 39
mm9_v1_chr1_+_141318927_141318961	0.0220544	NANOG{mouse}.p2	NM_172643|Zbtb41|226470|zinc finger and BTB domain containing 41 homolog	AK036544|Zbtb41|226470|zinc finger and BTB domain containing 41 homolog
mm9_v1_chr17_-_57367499_57367520	0.0220048	NANOG{mouse}.p2	BC043338|C3|12266|complement component 3	K02782|C3|12266|complement component 3
mm9_v1_chr7_-_97089575_97089723	0.0219031	NANOG{mouse}.p2	BC083330|l7Rn6|67669|lethal, Chr 7, Rinchik 6	BC003916|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK012166|l7Rn6|67669|lethal, Chr 7, Rinchik 6	DQ196315|l7Rn6|67669|lethal, Chr 7, Rinchik 6	DQ196316|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK002306|l7Rn6|67669|lethal, Chr 7, Rinchik 6	NM_026304|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK003324|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK008604|l7Rn6|67669|lethal, Chr 7, Rinchik 6
mm9_v1_chr7_-_52894111_52894127	0.0217303	NANOG{mouse}.p2	AK003910|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene	AK049852|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene	AK037147|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene
mm9_v1_chr17_+_29497858_29498034	0.0215516	NANOG{mouse}.p2	AK042260|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	NM_001159538|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	NM_013710|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	AK156151|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	AF017368|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	DQ344523|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2
mm9_v1_chr15_+_89284554_89284573	0.0214733	NANOG{mouse}.p2	AF310135|Mapk8ip2|60597|mitogen-activated protein kinase 8 interacting protein 2	BC029704|Mapk8ip2|60597|mitogen-activated protein kinase 8 interacting protein 2
mm9_v1_chr11_-_55209320_55209338	0.0211868	NANOG{mouse}.p2	AK192259|Sparc|20692|secreted acidic cysteine rich glycoprotein
mm9_v1_chr6_+_145159653_145159723	0.0211246	NANOG{mouse}.p2	NM_001163628|Lyrm5|67636|LYR motif containing 5	AF412300|Lyrm5|67636|LYR motif containing 5	NM_133688|Lyrm5|67636|LYR motif containing 5	AY753325|Lyrm5|67636|LYR motif containing 5	AF412298|Lyrm5|67636|LYR motif containing 5	AK075835|Lyrm5|67636|LYR motif containing 5	AF412299|Lyrm5|67636|LYR motif containing 5	AK015530|Lyrm5|67636|LYR motif containing 5	AK046179|Lyrm5|67636|LYR motif containing 5	BC021522|Lyrm5|67636|LYR motif containing 5
mm9_v1_chr4_+_151699954_151699986	0.0208814	NANOG{mouse}.p2	BC007139|Rpl22|19934|ribosomal protein L22	AK003022|Rpl22|19934|ribosomal protein L22	AK169731|Rpl22|19934|ribosomal protein L22	AK009094|Rpl22|19934|ribosomal protein L22	D17653|Rpl22|19934|ribosomal protein L22	AK168353|Rpl22|19934|ribosomal protein L22	AK169078|Rpl22|19934|ribosomal protein L22	BC021344|Rpl22|19934|ribosomal protein L22	NM_009079|Rpl22|19934|ribosomal protein L22
mm9_v1_chr16_+_34995000_34995001	0.0203216	NANOG{mouse}.p2	BC038902|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr7_+_19867963_19867987	0.0202393	NANOG{mouse}.p2	AK165915|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr7_-_112706892_112707045	0.0202007	NANOG{mouse}.p2	
mm9_v1_chr1_+_174405490_174405627	0.0201375	NANOG{mouse}.p2	NM_029612|Slamf9|98365|SLAM family member 9	AK090041|Slamf9|98365|SLAM family member 9	AK009505|Slamf9|98365|SLAM family member 9	BC019477|Slamf9|98365|SLAM family member 9	AB196824|Slamf9|98365|SLAM family member 9	AB196825|Slamf9|98365|SLAM family member 9	AB196826|Slamf9|98365|SLAM family member 9	AB196827|Slamf9|98365|SLAM family member 9
mm9_v1_chr12_-_60112855_60112974	0.0201249	NANOG{mouse}.p2	AY082671|Sec23a|20334|SEC23A (S. cerevisiae)	AK028152|Sec23a|20334|SEC23A (S. cerevisiae)
mm9_v1_chr17_+_45701100_45701100	0.0200841	NANOG{mouse}.p2	AK167343|Slc35b2|73836|solute carrier family 35, member B2	NM_028662|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr11_+_59021811_59021915	0.0199341	NANOG{mouse}.p2	AK012628|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	NM_024210|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	BC002181|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	AK009601|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene
mm9_v1_chr11_+_102466556_102466714	0.0198499	NANOG{mouse}.p2	AF139183|Fzd2|57265|frizzled homolog 2 (Drosophila)	AF206322|Fzd2|57265|frizzled homolog 2 (Drosophila)
mm9_v1_chr1_+_87804349_87804399	0.0194692	NANOG{mouse}.p2	AK206485|Itm2c|64294|integral membrane protein 2C	AK207473|Itm2c|64294|integral membrane protein 2C	AK218160|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr16_+_18498805_18498912	0.0194415	NANOG{mouse}.p2	AK087954|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	NM_001081682|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AK016952|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AK171253|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AF301595|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like
mm9_v1_chr3_+_104591955_104591985	0.0192647	NANOG{mouse}.p2	AK160650|Rhoc|11853|ras homolog gene family, member C	X80638|Rhoc|11853|ras homolog gene family, member C	BC004627|Rhoc|11853|ras homolog gene family, member C
mm9_v1_chr17_+_35187185_35187282	0.0191267	NANOG{mouse}.p2	AK167765|Clic1|114584|chloride intracellular channel 1	BC004658|Clic1|114584|chloride intracellular channel 1	NM_033444|Clic1|114584|chloride intracellular channel 1	AK150611|Clic1|114584|chloride intracellular channel 1
mm9_v1_chr7_+_97177668_97177676	0.0189778	NANOG{mouse}.p2	AK165252|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene	AK157435|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene	AK046045|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene
mm9_v1_chr17_-_27075896_27076239	0.0188307	NANOG{mouse}.p2	AK181681|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK187338|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC037500|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC021463|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr5_-_117041815_117041859	0.0187601	NANOG{mouse}.p2	BC056392|Srrm4|68955|serine/arginine repetitive matrix 4	AK005085|Srrm4|68955|serine/arginine repetitive matrix 4	NM_026886|Srrm4|68955|serine/arginine repetitive matrix 4
mm9_v1_chr16_+_48816968_48817099	0.0183547	NANOG{mouse}.p2	AF290871|Retnlb|57263|resistin like beta	NM_023881|Retnlb|57263|resistin like beta	AK020240|Retnlb|57263|resistin like beta	AF323083|Retnlb|57263|resistin like beta	BC022650|Retnlb|57263|resistin like beta
mm9_v1_chr12_+_73885063_73885417	0.0181644	NANOG{mouse}.p2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr2_+_26775279_26775409	0.018137	NANOG{mouse}.p2	AK215042|Surf2|20931|surfeit gene 2
mm9_v1_chr15_+_34236408_34236565	0.0180939	NANOG{mouse}.p2	AK035102|Matn2|17181|matrilin 2	NM_016762|Matn2|17181|matrilin 2	AK083151|Matn2|17181|matrilin 2	AK138211|Matn2|17181|matrilin 2	U69262|Matn2|17181|matrilin 2	AK163818|Matn2|17181|matrilin 2	AK081339|Matn2|17181|matrilin 2	BC092298|Matn2|17181|matrilin 2	BC005429|Matn2|17181|matrilin 2
mm9_v1_chr6_-_145159310_145159555	0.017784	NANOG{mouse}.p2	AK132912|Casc1|320662|cancer susceptibility candidate 1	AK039005|Casc1|320662|cancer susceptibility candidate 1	BC120743|Casc1|320662|cancer susceptibility candidate 1	BC125423|Casc1|320662|cancer susceptibility candidate 1	BC144801|Casc1|320662|cancer susceptibility candidate 1	AK034148|Casc1|320662|cancer susceptibility candidate 1	AY423542|Casc1|320662|cancer susceptibility candidate 1	AK082677|Casc1|320662|cancer susceptibility candidate 1	AY485607|Casc1|320662|cancer susceptibility candidate 1	AY485608|Casc1|320662|cancer susceptibility candidate 1	NM_177222|Casc1|320662|cancer susceptibility candidate 1	AK029682|Casc1|320662|cancer susceptibility candidate 1
mm9_v1_chr8_+_73051625_73051647	0.0177643	NANOG{mouse}.p2	AK170993|Fkbp8|14232|FK506 binding protein 8	NM_001111066|Fkbp8|14232|FK506 binding protein 8	NM_010223|Fkbp8|14232|FK506 binding protein 8	AK152198|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr7_-_67285104_67285104	0.0176961	NANOG{mouse}.p2	NM_001082962|Snrpn|20646|small nuclear ribonucleoprotein N
mm9_v1_chrX_-_91457942_91457985	0.0176922	NANOG{mouse}.p2	BC036993|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AJ006587|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
mm9_v1_chr5_-_87335956_87335985	0.0175388	NANOG{mouse}.p2	BC028826|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	NM_153598|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	AK145951|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34
mm9_v1_chr10_-_13272899_13272947	0.017531	NANOG{mouse}.p2	BC037606|Pex3|56535|peroxisomal biogenesis factor 3	AK005315|Pex3|56535|peroxisomal biogenesis factor 3	AK012827|Pex3|56535|peroxisomal biogenesis factor 3	AK146934|Pex3|56535|peroxisomal biogenesis factor 3	NM_001164195|Pex3|56535|peroxisomal biogenesis factor 3	NM_019961|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr7_+_140175699_140175731	0.0174197	NANOG{mouse}.p2	AJ250693|Zranb1|360216|zinc finger, RAN-binding domain containing 1
mm9_v1_chr9_-_97933533_97933585	0.0172602	NANOG{mouse}.p2	AJ278069|Clstn2|64085|calsyntenin 2	BC063058|Clstn2|64085|calsyntenin 2	NM_022319|Clstn2|64085|calsyntenin 2
mm9_v1_chr11_+_87032504_87032509	0.0169554	NANOG{mouse}.p2	AK004018|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr6_+_29644178_29644255	0.0168011	NANOG{mouse}.p2	AF276890|Tspan33|232670|tetraspanin 33	AK172176|Tspan33|232670|tetraspanin 33	AK004954|Tspan33|232670|tetraspanin 33	BC024685|Tspan33|232670|tetraspanin 33	NM_146173|Tspan33|232670|tetraspanin 33
mm9_v1_chr7_+_25682507_25682533	0.0158253	NANOG{mouse}.p2	AK143605|Cd79a|12518|CD79A antigen (immunoglobulin-associated alpha)	NM_007655|Cd79a|12518|CD79A antigen (immunoglobulin-associated alpha)	X13450|Cd79a|12518|CD79A antigen (immunoglobulin-associated alpha)	BC027633|Cd79a|12518|CD79A antigen (immunoglobulin-associated alpha)
mm9_v1_chrX_+_137491455_137491457	0.015774	NANOG{mouse}.p2	AK162404|Atg4a|666468|autophagy-related 4A (yeast)	BC089500|Atg4a|666468|autophagy-related 4A (yeast)	NM_174875|Atg4a|666468|autophagy-related 4A (yeast)	AK041379|Atg4a|666468|autophagy-related 4A (yeast)
mm9_v1_chr9_+_109778461_109778493	0.0157585	NANOG{mouse}.p2	BC046296|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)	AK077609|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)	U27323|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)
mm9_v1_chr3_+_94497485_94497530	0.0154332	NANOG{mouse}.p2	NM_019414|Selenbp2|20342|selenium binding protein 2	S56599|Selenbp2|20342|selenium binding protein 2	BC024106|Selenbp2|20342|selenium binding protein 2
mm9_v1_chr9_-_7932402_7932403	0.015423	NANOG{mouse}.p2	AK212471|Yap1|22601|yes-associated protein 1	AK215870|Yap1|22601|yes-associated protein 1
mm9_v1_chr2_-_104334599_104334605	0.0151974	NANOG{mouse}.p2	
mm9_v1_chr7_+_114179649_114179650	0.0150753	NANOG{mouse}.p2	NM_147034|Olfr713|259036|olfactory receptor 713	BC100704|Olfr713|259036|olfactory receptor 713
mm9_v1_chr7_-_52713370_52713456	0.0150565	NANOG{mouse}.p2	
mm9_v1_chr1_-_158649117_158649213	0.014769	NANOG{mouse}.p2	BC031473|Fam20b|215015|family with sequence similarity 20, member B
mm9_v1_chr4_+_151699834_151699937	0.0147242	NANOG{mouse}.p2	BC096390|Rpl22|19934|ribosomal protein L22
mm9_v1_chr5_-_104406395_104406398	0.0144296	NANOG{mouse}.p2	
mm9_v1_chrX_+_130442964_130443234	0.0142725	NANOG{mouse}.p2	NM_001083895|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	NM_026838|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	AK136935|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	BC028307|Srpx2|68792|sushi-repeat-containing protein, X-linked 2
mm9_v1_chr2_-_84555162_84555500	0.0141494	NANOG{mouse}.p2	BC065155|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK082513|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK145086|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK173251|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AY894891|Zdhhc5|228136|zinc finger, DHHC domain containing 5	NM_144887|Zdhhc5|228136|zinc finger, DHHC domain containing 5
mm9_v1_chr8_+_120225803_120225850	0.014006	NANOG{mouse}.p2	Y09517|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2	AK004950|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2	NM_008290|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2
mm9_v1_chr18_-_67405109_67405483	0.0138511	NANOG{mouse}.p2	BC045146|Mppe1|225651|metallophosphoesterase 1	BC086456|Mppe1|225651|metallophosphoesterase 1	AK172496|Mppe1|225651|metallophosphoesterase 1	AK172000|Mppe1|225651|metallophosphoesterase 1	AK154265|Mppe1|225651|metallophosphoesterase 1	AK041262|Mppe1|225651|metallophosphoesterase 1	NM_172630|Mppe1|225651|metallophosphoesterase 1
mm9_v1_chr6_+_72548468_72548554	0.0136374	NANOG{mouse}.p2	AK144115|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)
mm9_v1_chr1_+_159388702_159388722	0.0135256	NANOG{mouse}.p2	AK151310|BC026585|226527|cDNA sequence BC026585	BC026585|BC026585|226527|cDNA sequence BC026585	AK143913|BC026585|226527|cDNA sequence BC026585	NM_001033284|BC026585|226527|cDNA sequence BC026585
mm9_v1_chr5_-_31260302_31260437	0.0134523	NANOG{mouse}.p2	AK202976|Preb|50907|prolactin regulatory element binding	AK179426|Preb|50907|prolactin regulatory element binding	AK197590|Preb|50907|prolactin regulatory element binding	AK206719|Preb|50907|prolactin regulatory element binding
mm9_v1_chr6_+_119125257_119125415	0.0134302	NANOG{mouse}.p2	AK153860|Dcp1b|319618|DCP1 decapping enzyme homolog b (S. cerevisiae)	NM_001033379|Dcp1b|319618|DCP1 decapping enzyme homolog b (S. cerevisiae)	BC141162|Dcp1b|319618|DCP1 decapping enzyme homolog b (S. cerevisiae)	BC141163|Dcp1b|319618|DCP1 decapping enzyme homolog b (S. cerevisiae)	AK050548|Dcp1b|319618|DCP1 decapping enzyme homolog b (S. cerevisiae)	AK049193|Dcp1b|319618|DCP1 decapping enzyme homolog b (S. cerevisiae)	AK216011|Dcp1b|319618|DCP1 decapping enzyme homolog b (S. cerevisiae)	AK047334|Dcp1b|319618|DCP1 decapping enzyme homolog b (S. cerevisiae)
mm9_v1_chr12_-_112615921_112615933	0.0131954	NANOG{mouse}.p2	NM_183016|Cdc42bpb|217866|CDC42 binding protein kinase beta
mm9_v1_chr11_+_120645722_120645897	0.0131908	NANOG{mouse}.p2	BC003350|Gps1|209318|G protein pathway suppressor 1	NM_145370|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr16_+_20672847_20672848	0.0129398	NANOG{mouse}.p2	AK134557|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr11_-_102152310_102152512	0.0126846	NANOG{mouse}.p2	AK218190|Atxn7l3|217218|ataxin 7-like 3	AK053165|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr2_+_91512033_91512158	0.0124937	NANOG{mouse}.p2	AK083702|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr19_+_40734282_40734322	0.0122856	NANOG{mouse}.p2	AK030601|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	NM_009848|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	BC011278|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	AF037366|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1
mm9_v1_chr12_-_27100112_27100136	0.0122549	NANOG{mouse}.p2	AF360998|Rnf144a|108089|ring finger protein 144A	NM_001081977|Rnf144a|108089|ring finger protein 144A	NM_080563|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr10_+_117641997_117642023	0.012092	NANOG{mouse}.p2	AJ249491|Il22|50929|interleukin 22	BC104348|Il22|50929|interleukin 22	BC104349|Il22|50929|interleukin 22	NM_016971|Il22|50929|interleukin 22	BC116235|Il22|50929|interleukin 22
mm9_v1_chr10_-_70622370_70622639	0.0120099	NANOG{mouse}.p2	AF319464|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	BC111523|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	NM_031397|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	AK076154|Bicc1|83675|bicaudal C homolog 1 (Drosophila)
mm9_v1_chr4_+_86221615_86221621	0.0118093	NANOG{mouse}.p2	BC037615|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr4_-_137871509_137871567	0.0117062	NANOG{mouse}.p2	AK181855|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr2_+_152737083_152737087	0.0116936	NANOG{mouse}.p2	AK079396|Mylk2|228785|myosin, light polypeptide kinase 2, skeletal muscle	NM_001081044|Mylk2|228785|myosin, light polypeptide kinase 2, skeletal muscle
mm9_v1_chr14_-_31756446_31756482	0.0114208	NANOG{mouse}.p2	BC013465|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	X70391|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	BC028814|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	AK149500|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	NM_008406|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1
mm9_v1_chr6_+_47827535_47827591	0.0112199	NANOG{mouse}.p2	NM_146175|Zfp282|101095|zinc finger protein 282	AK088531|Zfp282|101095|zinc finger protein 282	AK148038|Zfp282|101095|zinc finger protein 282
mm9_v1_chr10_+_42398721_42398783	0.0110315	NANOG{mouse}.p2	AK044897|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AF533890|Ostm1|14628|osteopetrosis associated transmembrane protein 1	NM_172416|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK004546|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK050513|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK053664|Ostm1|14628|osteopetrosis associated transmembrane protein 1	BC057635|Ostm1|14628|osteopetrosis associated transmembrane protein 1
mm9_v1_chr14_-_65716859_65716886	0.0106154	NANOG{mouse}.p2	
mm9_v1_chr4_-_117852550_117852665	0.0102695	NANOG{mouse}.p2	BC028866|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK145947|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK054095|Kdm4a|230674|lysine (K)-specific demethylase 4A	AK145066|Kdm4a|230674|lysine (K)-specific demethylase 4A	NM_001161823|Kdm4a|230674|lysine (K)-specific demethylase 4A	NM_172382|Kdm4a|230674|lysine (K)-specific demethylase 4A
mm9_v1_chr4_-_53156928_53156953	0.0102234	NANOG{mouse}.p2	X75926|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr8_+_112229383_112229581	0.0101141	NANOG{mouse}.p2	AK166399|Zfp821|75871|zinc finger protein 821	AK155121|Zfp821|75871|zinc finger protein 821	NM_001167946|Zfp821|75871|zinc finger protein 821	AK157971|Zfp821|75871|zinc finger protein 821	AK136168|Zfp821|75871|zinc finger protein 821	AK165387|Zfp821|75871|zinc finger protein 821	BC032193|Zfp821|75871|zinc finger protein 821
mm9_v1_chr9_+_120448960_120448967	0.0100102	NANOG{mouse}.p2	AK046218|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AK087561|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AY714060|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	BC079871|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AY376710|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3
mm9_v1_chr12_-_27100017_27100080	0.00997808	NANOG{mouse}.p2	AK038586|Rnf144a|108089|ring finger protein 144A	BC030187|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr17_-_34324234_34324335	0.00977136	NANOG{mouse}.p2	CT010227|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	U22447|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	U22448|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	U22919|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	U22920|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	AK008429|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	S58203|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	BC116364|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44454|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44456|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44457|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44458|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44461|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	NM_013585|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	S59862|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	AK171670|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	BC032210|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	AK152743|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
mm9_v1_chr4_-_86873866_86873867	0.00951161	NANOG{mouse}.p2	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr3_-_36374739_36374822	0.00924461	NANOG{mouse}.p2	NM_009673|Anxa5|11747|annexin A5
mm9_v1_chr17_+_72022598_72022608	0.00907407	NANOG{mouse}.p2	NM_177087|Fam179a|320159|family with sequence similarity 179, member A
mm9_v1_chr11_-_103226457_103226546	0.00883845	NANOG{mouse}.p2	
mm9_v1_chr9_+_56266618_56266679	0.00872913	NANOG{mouse}.p2	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr11_+_75007475_75007498	0.00856126	NANOG{mouse}.p2	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr1_+_137635977_137636035	0.00851947	NANOG{mouse}.p2	CT010278|Csrp1|13007|cysteine and glycine-rich protein 1
mm9_v1_chr3_+_130320365_130320530	0.00843813	NANOG{mouse}.p2	AK049937|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	NM_001163587|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	AK030395|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	AK005060|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	NM_027907|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC043680|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC022644|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC058592|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1
mm9_v1_chr9_-_14587400_14587407	0.00828402	NANOG{mouse}.p2	BC020398|Ankrd49|56503|ankyrin repeat domain 49	BC019777|Ankrd49|56503|ankyrin repeat domain 49	NM_019683|Ankrd49|56503|ankyrin repeat domain 49
mm9_v1_chr2_+_88231404_88231405	0.00813301	NANOG{mouse}.p2	BC140109|Olfr1178|258203|olfactory receptor 1178	BC140153|Olfr1178|258203|olfactory receptor 1178	BC143174|Olfr1178|258203|olfactory receptor 1178	NM_001011868|Olfr1178|258203|olfactory receptor 1178
mm9_v1_chr2_+_87642546_87642547	0.00807802	NANOG{mouse}.p2	BC140120|Olfr1143|258290|olfactory receptor 1143	BC140161|Olfr1143|258290|olfactory receptor 1143	BC140202|Olfr1143|258290|olfactory receptor 1143	NM_146293|Olfr1143|258290|olfactory receptor 1143
mm9_v1_chr2_-_120676125_120676339	0.00798588	NANOG{mouse}.p2	AK046978|Ttbk2|140810|tau tubulin kinase 2	AK053820|Ttbk2|140810|tau tubulin kinase 2	AK137024|Ttbk2|140810|tau tubulin kinase 2	AK148269|Ttbk2|140810|tau tubulin kinase 2	NM_001024856|Ttbk2|140810|tau tubulin kinase 2	NM_001024857|Ttbk2|140810|tau tubulin kinase 2	NM_080788|Ttbk2|140810|tau tubulin kinase 2	AK077011|Ttbk2|140810|tau tubulin kinase 2
mm9_v1_chr10_+_13273025_13273117	0.00798494	NANOG{mouse}.p2	AK021291|Adat2|66757|adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
mm9_v1_chr5_+_111269020_111269035	0.0078763	NANOG{mouse}.p2	BC056617|Chek2|50883|CHK2 checkpoint homolog (S. pombe)	AK044913|Chek2|50883|CHK2 checkpoint homolog (S. pombe)	NM_016681|Chek2|50883|CHK2 checkpoint homolog (S. pombe)
mm9_v1_chr2_+_26442112_26442158	0.0078211	NANOG{mouse}.p2	NM_001164564|Egfl7|353156|EGF-like domain 7	AK139377|Egfl7|353156|EGF-like domain 7
mm9_v1_chr14_-_54873524_54873603	0.00767479	NANOG{mouse}.p2	BC053379|Dad1|13135|defender against cell death 1	AK006711|Dad1|13135|defender against cell death 1	BC024378|Dad1|13135|defender against cell death 1	AK054480|Dad1|13135|defender against cell death 1	U83628|Dad1|13135|defender against cell death 1	AK030925|Dad1|13135|defender against cell death 1	BC058116|Dad1|13135|defender against cell death 1	AK002446|Dad1|13135|defender against cell death 1	NM_001113358|Dad1|13135|defender against cell death 1	NM_010015|Dad1|13135|defender against cell death 1
mm9_v1_chr8_+_12984287_12984308	0.00761867	NANOG{mouse}.p2	AK147252|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr5_-_31597792_31598351	0.00761719	NANOG{mouse}.p2	BC139278|Fndc4|64339|fibronectin type III domain containing 4	BC139292|Fndc4|64339|fibronectin type III domain containing 4	AK018154|Fndc4|64339|fibronectin type III domain containing 4	AK013203|Fndc4|64339|fibronectin type III domain containing 4	AK163183|Fndc4|64339|fibronectin type III domain containing 4	NM_022424|Fndc4|64339|fibronectin type III domain containing 4
mm9_v1_chr9_+_108564418_108564538	0.00752944	NANOG{mouse}.p2	AK161086|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	AK075624|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	NM_020520|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	BC029733|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	AK152436|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	BC052871|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
mm9_v1_chr4_+_86221626_86221649	0.00746092	NANOG{mouse}.p2	AK144591|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr13_+_113254277_113254381	0.00737051	NANOG{mouse}.p2	NM_010560|Il6st|16195|interleukin 6 signal transducer	BC058679|Il6st|16195|interleukin 6 signal transducer	AK170020|Il6st|16195|interleukin 6 signal transducer	BC020454|Il6st|16195|interleukin 6 signal transducer
mm9_v1_chrX_-_18038399_18038522	0.00690758	NANOG{mouse}.p2	AK085770|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	BC118515|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	NM_175228|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	AK016298|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	AK163928|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene
mm9_v1_chr11_-_100981015_100981199	0.00681954	NANOG{mouse}.p2	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr7_+_148021503_148021519	0.00674842	NANOG{mouse}.p2	DQ225768|1190003J15Rik|76974|RIKEN cDNA 1190003J15 gene
mm9_v1_chr11_+_98554734_98554759	0.0066991	NANOG{mouse}.p2	AK183122|Psmd3|22123|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	AK205568|Psmd3|22123|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
mm9_v1_chr6_-_28399248_28399339	0.0066786	NANOG{mouse}.p2	BC131908|Pax4|18506|paired box gene 4	BC131906|Pax4|18506|paired box gene 4	BC145168|Pax4|18506|paired box gene 4	BC145169|Pax4|18506|paired box gene 4	AB010557|Pax4|18506|paired box gene 4	AF145233|Pax4|18506|paired box gene 4	AB010558|Pax4|18506|paired box gene 4	AB008912|Pax4|18506|paired box gene 4	NM_001159925|Pax4|18506|paired box gene 4	NM_001159926|Pax4|18506|paired box gene 4	NM_011038|Pax4|18506|paired box gene 4
mm9_v1_chr9_-_122220036_122220045	0.00650949	NANOG{mouse}.p2	
mm9_v1_chr1_-_82232392_82232507	0.00621983	NANOG{mouse}.p2	AK141842|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr9_+_106124928_106124996	0.00617207	NANOG{mouse}.p2	AB045181|Tlr9|81897|toll-like receptor 9	NM_031178|Tlr9|81897|toll-like receptor 9	AF314224|Tlr9|81897|toll-like receptor 9	AF348140|Tlr9|81897|toll-like receptor 9
mm9_v1_chr4_-_41261815_41261871	0.00606546	NANOG{mouse}.p2	AK087517|Dcaf12|68970|DDB1 and CUL4 associated factor 12	BC023852|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK083369|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK031089|Dcaf12|68970|DDB1 and CUL4 associated factor 12
mm9_v1_chr4_+_43575487_43575594	0.00606138	NANOG{mouse}.p2	AK132785|Creb3|12913|cAMP responsive element binding protein 3	AK144208|Creb3|12913|cAMP responsive element binding protein 3	NM_013497|Creb3|12913|cAMP responsive element binding protein 3	AK090077|Creb3|12913|cAMP responsive element binding protein 3	BC002094|Creb3|12913|cAMP responsive element binding protein 3
mm9_v1_chr11_-_116712559_116712636	0.00591991	NANOG{mouse}.p2	AF250133|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr3_-_108013851_108013851	0.00586069	NANOG{mouse}.p2	AK046849|Atxn7l2|72522|ataxin 7-like 2	NM_175183|Atxn7l2|72522|ataxin 7-like 2
mm9_v1_chr19_-_6982094_6982140	0.00585915	NANOG{mouse}.p2	BC014682|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr18_+_34569074_34569091	0.00561604	NANOG{mouse}.p2	AF182033|Pkd2l2|53871|polycystic kidney disease 2-like 2	NM_001163004|Pkd2l2|53871|polycystic kidney disease 2-like 2	NM_016927|Pkd2l2|53871|polycystic kidney disease 2-like 2	AK133423|Pkd2l2|53871|polycystic kidney disease 2-like 2	AK142697|Pkd2l2|53871|polycystic kidney disease 2-like 2	BC138717|Pkd2l2|53871|polycystic kidney disease 2-like 2
mm9_v1_chr14_+_30781514_30781692	0.00533579	NANOG{mouse}.p2	NM_019979|Selk|80795|selenoprotein K	AK008419|Selk|80795|selenoprotein K	BC038049|Selk|80795|selenoprotein K	AK003206|Selk|80795|selenoprotein K	BC096677|Selk|80795|selenoprotein K	AK007523|Selk|80795|selenoprotein K	AK006674|Selk|80795|selenoprotein K	BC096044|Selk|80795|selenoprotein K
mm9_v1_chr14_-_32454146_32454155	0.00525631	NANOG{mouse}.p2	AK041686|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AJ132139|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AK050078|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	NM_019975|Hacl1|56794|2-hydroxyacyl-CoA lyase 1
mm9_v1_chr12_-_71212591_71212711	0.00520105	NANOG{mouse}.p2	AK141891|Nin|18080|ninein	AK134860|Nin|18080|ninein
mm9_v1_chr7_+_98239427_98239516	0.00467177	NANOG{mouse}.p2	AF388675|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr9_-_58388489_58388746	0.00462435	NANOG{mouse}.p2	AK031354|Cd276|102657|CD276 antigen	AY190318|Cd276|102657|CD276 antigen	BC019436|Cd276|102657|CD276 antigen	BC056608|Cd276|102657|CD276 antigen	NM_133983|Cd276|102657|CD276 antigen
mm9_v1_chr16_+_59302980_59302980	0.00440357	NANOG{mouse}.p2	BC128025|Olfr203|258479|olfactory receptor 203	NM_146486|Olfr203|258479|olfactory receptor 203
mm9_v1_chr4_+_104438905_104438999	0.00424466	NANOG{mouse}.p2	AK050313|C8b|110382|complement component 8, beta polypeptide	NM_133882|C8b|110382|complement component 8, beta polypeptide	BC096382|C8b|110382|complement component 8, beta polypeptide	AB077304|C8b|110382|complement component 8, beta polypeptide	AB077305|C8b|110382|complement component 8, beta polypeptide	AB077306|C8b|110382|complement component 8, beta polypeptide
mm9_v1_chr8_+_28233019_28233024	0.00401971	NANOG{mouse}.p2	AK020642|Gpr124|78560|G protein-coupled receptor 124
mm9_v1_chr2_+_177493957_177493997	0.00376891	NANOG{mouse}.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr17_+_56301980_56301995	0.00366873	NANOG{mouse}.p2	AK004949|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	BC032199|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1
mm9_v1_chr15_-_82991286_82991340	0.00356074	NANOG{mouse}.p2	AK178355|Cyb5r3|109754|cytochrome b5 reductase 3	AK181262|Cyb5r3|109754|cytochrome b5 reductase 3	AK183532|Cyb5r3|109754|cytochrome b5 reductase 3	AK187743|Cyb5r3|109754|cytochrome b5 reductase 3	AK190014|Cyb5r3|109754|cytochrome b5 reductase 3	AK211940|Cyb5r3|109754|cytochrome b5 reductase 3	AK211950|Cyb5r3|109754|cytochrome b5 reductase 3	AK213922|Cyb5r3|109754|cytochrome b5 reductase 3
mm9_v1_chr2_-_177691943_177692036	0.00342862	NANOG{mouse}.p2	BC042711|Gm14326|665211|predicted gene 14326	BC079554|Gm14326|665211|predicted gene 14326	NM_001190302|Gm14326|665211|predicted gene 14326
mm9_v1_chr4_-_129055102_129055140	0.00304828	NANOG{mouse}.p2	BC017614|Zbtb8a|73680|zinc finger and BTB domain containing 8a
mm9_v1_chr9_+_4309898_4309898	0.00263573	NANOG{mouse}.p2	AK168345|Kbtbd3|69149|kelch repeat and BTB (POZ) domain containing 3
mm9_v1_chr11_-_117830455_117830528	0.0023214	NANOG{mouse}.p2	AK155097|Socs3|12702|suppressor of cytokine signaling 3	BC052031|Socs3|12702|suppressor of cytokine signaling 3	AK157708|Socs3|12702|suppressor of cytokine signaling 3	AK170406|Socs3|12702|suppressor of cytokine signaling 3	AK151761|Socs3|12702|suppressor of cytokine signaling 3	AK152686|Socs3|12702|suppressor of cytokine signaling 3	AK159395|Socs3|12702|suppressor of cytokine signaling 3	AK047165|Socs3|12702|suppressor of cytokine signaling 3	AK139241|Socs3|12702|suppressor of cytokine signaling 3	AK150719|Socs3|12702|suppressor of cytokine signaling 3	AK152441|Socs3|12702|suppressor of cytokine signaling 3	AK152468|Socs3|12702|suppressor of cytokine signaling 3	AK152514|Socs3|12702|suppressor of cytokine signaling 3	AK172399|Socs3|12702|suppressor of cytokine signaling 3
mm9_v1_chr4_+_99496130_99496190	0.00207746	NANOG{mouse}.p2	BC112327|Efcab7|230500|EF-hand calcium binding domain 7	AK143777|Efcab7|230500|EF-hand calcium binding domain 7	BC020077|Efcab7|230500|EF-hand calcium binding domain 7	NM_145549|Efcab7|230500|EF-hand calcium binding domain 7
mm9_v1_chr7_-_30512012_30512050	0.00202225	NANOG{mouse}.p2	BC144969|Catsperg2|76718|cation channel, sperm-associated, gamma 2	AK077059|Catsperg2|76718|cation channel, sperm-associated, gamma 2	AK138347|Catsperg2|76718|cation channel, sperm-associated, gamma 2	NM_029714|Catsperg2|76718|cation channel, sperm-associated, gamma 2	AK006911|Catsperg2|76718|cation channel, sperm-associated, gamma 2
mm9_v1_chr7_-_30836383_30836414	0.00159137	NANOG{mouse}.p2	AK030632|Zfp14|243906|zinc finger protein 14	AK045631|Zfp14|243906|zinc finger protein 14	AK028663|Zfp14|243906|zinc finger protein 14	BC066057|Zfp14|243906|zinc finger protein 14	AK032214|Zfp14|243906|zinc finger protein 14	NM_011748|Zfp14|243906|zinc finger protein 14	NM_178733|Zfp14|243906|zinc finger protein 14
mm9_v1_chr12_+_86311859_86311909	0.00126007	NANOG{mouse}.p2	NM_028632|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)	BC094619|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)	BC033045|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
mm9_v1_chr11_-_102680999_102681013	0.000987079	NANOG{mouse}.p2	BC071230|Gjc1|14615|gap junction protein, gamma 1	NM_001159383|Gjc1|14615|gap junction protein, gamma 1	AY390396|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr14_+_55087412_55087483	0.000972551	NANOG{mouse}.p2	BC011058|Lrp10|65107|low-density lipoprotein receptor-related protein 10
mm9_v1_chr14_-_32643594_32643685	0.000919216	NANOG{mouse}.p2	BC051456|Ankrd28|105522|ankyrin repeat domain 28	BC094609|Ankrd28|105522|ankyrin repeat domain 28	NM_001024604|Ankrd28|105522|ankyrin repeat domain 28
mm9_v1_chr6_+_122902755_122902762	0.000781025	NANOG{mouse}.p2	AK014135|Clec4a3|73149|C-type lectin domain family 4, member a3
mm9_v1_chr13_-_41582649_41582707	0.000633376	NANOG{mouse}.p2	BC053713|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK083374|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK030985|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AF009366|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_001111324|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr9_-_39380841_39380898	0.000527007	NANOG{mouse}.p2	NM_146508|Olfr959|258501|olfactory receptor 959	BC120617|Olfr959|258501|olfactory receptor 959	BC120619|Olfr959|258501|olfactory receptor 959
mm9_v1_chr9_-_113562893_113563007	0.000382325	NANOG{mouse}.p2	AK035750|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK086540|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK157704|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chr5_+_111268995_111269003	5.14461e-05	NANOG{mouse}.p2	AK170235|Chek2|50883|CHK2 checkpoint homolog (S. pombe)
